RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 USP8P40818 1118 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 COPB1P53618 953 aaKnown RBP12.05□□□□□ -0.48
USP54-204ENST00000422491 HERVK_113P62684 666 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 PI16Q6UXB8 463 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 NFXL1Q6ZNB6 911 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 CAPZA3Q96KX2 299 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 CEP131Q9UPN4 1083 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 TBC1D2BQ9UPU7 963 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 CTNND2Q9UQB3 1225 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 PDE2AO00408 941 aaPredicted RBP12.05□□□□□ -0.48
USP54-204ENST00000422491 LIFRP42702 1097 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 ZNF662Q6ZS27 426 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 JAKMIP2Q96AA8 810 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 EPSTI1Q96J88 318 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 VPS16Q9H269 839 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 CEP126Q9P2H0 1117 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 FAM184BQ9ULE4 1060 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 TFR2Q9UP52 801 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 ATRNO75882 1429 aa12.05□□□□□ -0.48
USP54-204ENST00000422491 LRP6O75581 1613 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 SHTN1A0MZ66 631 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 COBLO75128 1261 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 CCDC172P0C7W6 258 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 GNGT1P63211 74 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 TMEM67Q5HYA8 995 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 TAB2Q9NYJ8 693 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 PKD1L3Q7Z443 1732 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 KIF1AQ12756 1690 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 GCP02774 474 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 ATP6V1AP38606 617 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 FNTAP49354 379 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 OXER1Q8TDS5 423 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 CWC25Q9NXE8 425 aaPredicted RBP12.04□□□□□ -0.48
USP54-204ENST00000422491 SLC12A7Q9Y666 1083 aa12.04□□□□□ -0.48
USP54-204ENST00000422491 KIF13AQ9H1H9 1805 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 CCDC196A0A1B0GTZ2 297 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 GOLGA8KD6RF30 607 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 ADD2P35612 726 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 SPAG1Q07617 926 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 TCP11X2Q5H9J9 407 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 CCDC122Q5T0U0 273 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 DNAJC7Q99615 494 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 RABEP2Q9H5N1 569 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 AXIN2Q9Y2T1 843 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 TTC26A0AVF1 554 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 ZNF185O15231 689 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 GLI3P10071 1580 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 SKOR1P84550 965 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 WDR59Q6PJI9 974 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 SYMPKQ92797 1274 aaKnown RBP12.03□□□□□ -0.48
USP54-204ENST00000422491 A1CFQ9NQ94 594 aaKnown RBP12.03□□□□□ -0.48
USP54-204ENST00000422491 DONSONQ9NYP3 566 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 RWDD2AQ9UIY3 292 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 CEP83Q9Y592 693 aa12.03□□□□□ -0.48
USP54-204ENST00000422491 EPB41P11171 864 aaKnown RBP12.02□□□□□ -0.48
USP54-204ENST00000422491 SF3B2Q13435 895 aaKnown RBP12.02□□□□□ -0.48
USP54-204ENST00000422491 TTF1Q15361 905 aaPredicted RBP12.02□□□□□ -0.48
USP54-204ENST00000422491 AMOTL1Q8IY63 956 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 OR8K1Q8NGG5 319 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 RRP36Q96EU6 259 aaKnown RBP12.02□□□□□ -0.48
USP54-204ENST00000422491 CABP5Q9NP86 173 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 INCENPQ9NQS7 918 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 SAMM50Q9Y512 469 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 NUP188Q5SRE5 1749 aa12.02□□□□□ -0.48
USP54-204ENST00000422491 ANO9A1A5B4 782 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 KCNJ18B7U540 433 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 PHKG2P15735 406 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 DDR1Q08345 913 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 C2orf54Q08AI8 447 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 KCNJ12Q14500 433 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 RPAINQ86UA6 219 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 EHBP1Q8NDI1 1231 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP54-204ENST00000422491 GNL3LQ9NVN8 582 aaKnown RBP12.02□□□□□ -0.49
USP54-204ENST00000422491 ZSWIM5Q9P217 1185 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 XDHP47989 1333 aa12.02□□□□□ -0.49
USP54-204ENST00000422491 FSBPO95073 299 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 SND1Q7KZF4 910 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP54-204ENST00000422491 ANKRD18AQ8IVF6 992 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TRIM22Q8IYM9 498 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TTC5Q8N0Z6 440 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 CAPN7Q9Y6W3 813 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 AKAP11Q9UKA4 1901 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 RCCD1A6NED2 376 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 FAM205CA6NFA0 338 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 IFIT3O14879 490 aaKnown RBP12.01□□□□□ -0.49
USP54-204ENST00000422491 DEXIO95424 95 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 MCAMP43121 646 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 UBXN1Q04323 297 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 PAK1Q13153 545 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TTMPQ5BVD1 217 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TTC19Q6DKK2 380 aaPredicted RBP12.01□□□□□ -0.49
USP54-204ENST00000422491 MMGT1Q8N4V1 131 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 CAGE1Q8TC20 777 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 RUBCNQ92622 972 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 CABS1Q96KC9 395 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 PURBQ96QR8 312 aaKnown RBP12.01□□□□□ -0.49
USP54-204ENST00000422491 LACRTQ9GZZ8 138 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TRIM75PA6NK02 468 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 NBPF26B4DH59 902 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms