RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CNGA4Q8IV77 575 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 IGSF22Q8N9C0 903 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 CCDC12Q8WUD4 166 aaPredicted RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 ZSCAN10Q96SZ4 725 aaPredicted RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 ANKZF1Q9H8Y5 726 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 FEZ2Q9UHY8 353 aaPredicted RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 IQSEC3Q9UPP2 1182 aaPredicted RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 TNKSO95271 1327 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 DISP2A7MBM2 1401 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 PPP1R3GB7ZBB8 358 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 TRIM66O15016 1216 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 CYP7A1P22680 504 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 BCAMP50895 628 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 EIF5P55010 431 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 RBL2Q08999 1139 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 CATIPQ7Z7H3 387 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SMYD4Q8IYR2 804 aaPredicted RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 CEP112Q8N8E3 955 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 HNRNPLLQ8WVV9 542 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 BRIP1Q9BX63 1249 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SYNRGQ9UMZ2 1314 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 MYH6P13533 1939 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SLIT2O94813 1529 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 DLEC1Q9Y238 1755 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 MAGEB6P1A0A0J9YX57 407 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 CCDC151A5D8V7 595 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SMIM22K7EJ46 135 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SNAP23O00161 211 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 KIF5CO60282 957 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 TRAPPC10P48553 1259 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 FOXR1Q6PIV2 292 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 SRGAP1Q7Z6B7 1085 aa11.1□□□□□ -0.63
CD44-206ENST00000415148 MSL3Q8N5Y2 521 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 CDC5LQ99459 802 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 GNL3LQ9NVN8 582 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 TTF2Q9UNY4 1162 aaKnown RBP11.1□□□□□ -0.63
CD44-206ENST00000415148 RNF225M0QZC1 329 aaPredicted RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 WNT7AO00755 349 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 MFAP3LO75121 409 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 DDAH1O94760 285 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 SPAG1Q07617 926 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 TRIM14Q14142 442 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 TMTC1Q8IUR5 882 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 ENAHQ8N8S7 591 aaPredicted RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 SYMPKQ92797 1274 aaKnown RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 TNFRSF25Q93038 417 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 EPSTI1Q96J88 318 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 MYO1AQ9UBC5 1043 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 LIMA1Q9UHB6 759 aaKnown RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 CDC23Q9UJX2 597 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 ZNF804BA4D1E1 1349 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 BCL9LQ86UU0 1499 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 LAMB2P55268 1798 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 MYH8P13535 1937 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 MINDY4BA8MYZ0 360 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 TUBBP07437 444 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 AFMP43652 599 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 ATP2C1P98194 919 aaPredicted RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 IFIT1BQ5T764 474 aaKnown RBP11.09□□□□□ -0.63
CD44-206ENST00000415148 KLHL10Q6JEL2 608 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 IQCA1Q86XH1 822 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 IQUBQ8NA54 791 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 PDE11AQ9HCR9 933 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 VPS54Q9P1Q0 977 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 ADAM21Q9UKJ8 722 aa11.09□□□□□ -0.63
CD44-206ENST00000415148 DUOX1Q9NRD9 1551 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 CDC25AP30304 524 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 SEMA3FQ13275 785 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 NOM1Q5C9Z4 860 aaKnown RBP11.08□□□□□ -0.64
CD44-206ENST00000415148 EARS2Q5JPH6 523 aaKnown RBP11.08□□□□□ -0.64
CD44-206ENST00000415148 TTC38Q5R3I4 469 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 MIGA1Q8NAN2 632 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 ACRBPQ8NEB7 543 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 TRIM34Q9BYJ4 488 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 RWDD2AQ9UIY3 292 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 V9GY48 417 aaPredicted RBP11.08□□□□□ -0.64
CD44-206ENST00000415148 EXOC5O00471 708 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 MAP2K7O14733 419 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 USP5P45974 858 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 LMAN1P49257 510 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 CHRNDQ07001 517 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 TROAPQ12815 778 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 MCM6Q14566 821 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 ZSCAN26Q16670 478 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 BEND6Q5SZJ8 279 aaPredicted RBP11.08□□□□□ -0.64
CD44-206ENST00000415148 STAMQ92783 540 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 RIOK1Q9BRS2 568 aaKnown RBP11.08□□□□□ -0.64
CD44-206ENST00000415148 RMND1Q9NWS8 449 aa11.08□□□□□ -0.64
CD44-206ENST00000415148 PHLPP1O60346 1717 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 hCG_1642624A0A1W2PR95 340 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 CHMP4BP1P59074 171 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 GPS2Q13227 327 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 E2F4Q16254 413 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 TMTC3Q6ZXV5 915 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 TXLNBQ8N3L3 684 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 MSANTD4Q8NCY6 345 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 ANKRD20A12PQ8NF67 263 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 ABCB6Q9NP58 842 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 CCDC87Q9NVE4 849 aa11.07□□□□□ -0.64
CD44-206ENST00000415148 RAB21Q9UL25 225 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms