RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MAPK13O15264 365 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 DNM2P50570 870 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 CYB5RLQ6IPT4 315 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 DACT3Q96B18 629 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-206ENST00000409809 IGHDP01880 384 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 HNRNPCP07910 306 aaKnown RBP eCLIP14.17□□□□□ -0.14
COL6A3-206ENST00000409809 VTI1AQ96AJ9 217 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 MRGBPQ9NV56 204 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 RSBN1LQ6PCB5 846 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-206ENST00000409809 ABCF2Q9UG63 623 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 FAM135BQ49AJ0 1406 aa14.17□□□□□ -0.14
COL6A3-206ENST00000409809 CCT6AP40227 531 aaKnown RBP14.16□□□□□ -0.14
COL6A3-206ENST00000409809 EXOC7Q9UPT5 735 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 PDE6CP51160 858 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 NCBP1Q09161 790 aaKnown RBP14.16□□□□□ -0.14
COL6A3-206ENST00000409809 TSPY2A6NKD2 308 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 TNFAIP3P21580 790 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 STXBP3O00186 592 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 APOA1P02647 267 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 MCF2P10911 925 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 BLVRAP53004 296 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 LRRC8BQ6P9F7 803 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 CSGALNACT2Q8N6G5 542 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 PTPDC1A2A3K4 754 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 KRIT1O00522 736 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 SMTNP53814 917 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 ADGBQ8N7X0 1667 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 SLC12A2P55011 1212 aa14.16□□□□□ -0.14
COL6A3-206ENST00000409809 CCDC159P0C7I6 412 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 DHX9Q08211 1270 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 UPF3AQ9H1J1 476 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 NFE2L3Q9Y4A8 694 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 PFDN6O15212 129 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 RHPN1Q8TCX5 695 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 MAD1L1Q9Y6D9 718 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 DEXIO95424 95 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 LONP1P36776 959 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 ADCY2Q08462 1091 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 CCDC125Q86Z20 511 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 TEX13AQ9BXU3 409 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 GOLGA8CPA6NN73 597 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 FAM177BA6PVY3 158 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 N4BP1O75113 896 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 NR1D1P20393 614 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 PLCB4Q15147 1175 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 TMEM60Q9H2L4 133 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 TMEM110-MUSTN1A8MSY1 372 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 KPNA2P52292 529 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 KRR1Q13601 381 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 TBC1D23Q9NUY8 699 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 IRAK4Q9NWZ3 460 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 MAGEA1P43355 309 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 MRPL46Q9H2W6 279 aaKnown RBP14.15□□□□□ -0.14
COL6A3-206ENST00000409809 TMOD4Q9NZQ9 345 aa14.15□□□□□ -0.14
COL6A3-206ENST00000409809 PNMA6AP0CW24 399 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 LZTS2Q9BRK4 669 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 SUFUQ9UMX1 484 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 IPO5O00410 1097 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 MCF2LO15068 1137 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 SPAG7O75391 227 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 YWHAEP62258 255 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 CREB3L3Q68CJ9 461 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 PPP1R42Q7Z4L9 355 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 TMEM87BQ96K49 555 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 CCDC138Q96M89 665 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 RPSAP08865 295 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 MAP3K10Q02779 954 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 ZC3H18Q86VM9 953 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 ARHGAP31Q2M1Z3 1444 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 SPDYE3A6NKU9 549 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 TEKT1Q969V4 418 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 TM6SF1Q9BZW5 370 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 SEPT3Q9UH03 358 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 CTNND1O60716 968 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 KRT75O95678 551 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 MYL6BP14649 208 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 MKRN3Q13064 507 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 ATP1A2P50993 1020 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 PSPC1Q8WXF1 523 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 CDK19Q9BWU1 502 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 SAMM50Q9Y512 469 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 GCFC2P16383 781 aaKnown RBP14.14□□□□□ -0.15
COL6A3-206ENST00000409809 KIAA1468Q9P260 1216 aa14.14□□□□□ -0.15
COL6A3-206ENST00000409809 POLR3AO14802 1390 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 KRT8P05787 483 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 PLCG2P16885 1265 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 CUL4BQ13620 913 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 PHKBQ93100 1093 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 CDC5LQ99459 802 aaKnown RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 ARHGAP26Q9UNA1 814 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 GARSP41250 739 aaKnown RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 AP2B1P63010 937 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 ANKLE2Q86XL3 938 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 CEP19Q96LK0 163 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 POLR3CQ9BUI4 534 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 MID2Q9UJV3 735 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 TPCN1Q9ULQ1 816 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 TRAF5O00463 557 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 ADALQ6DHV7 355 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms