RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 LAMC1P11047 1609 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CCNT1O60563 726 aaKnown RBP12.3□□□□□ -0.44
HPS4-202ENST00000398145 PPARDQ03181 441 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 ABCB6Q9NP58 842 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 ZCCHC17Q9NP64 241 aaKnown RBP12.3□□□□□ -0.44
HPS4-202ENST00000398145 LRWD1Q9UFC0 647 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 CLTCL1P53675 1640 aa12.3□□□□□ -0.44
HPS4-202ENST00000398145 TET3O43151 1660 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 TMEM110-MUSTN1A8MSY1 372 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 SLFN14P0C7P3 912 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 ZBTB16Q05516 673 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 PTGDRQ13258 359 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 CABP7Q86V35 215 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 METP08581 1390 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 GYS2P54840 703 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 PTPN12Q05209 780 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 NONOQ15233 471 aaKnown RBP eCLIP12.29□□□□□ -0.44
HPS4-202ENST00000398145 SFMBT2Q5VUG0 894 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 TRMT1LQ7Z2T5 733 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 NKIRAS1Q9NYS0 192 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 MED23Q9ULK4 1368 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 PARP1P09874 1014 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 APBA1Q02410 837 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 TCIRG1Q13488 830 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 IQCB1Q15051 598 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 PPP1R7Q15435 360 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 ACRBPQ8NEB7 543 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 RPGRQ92834 1020 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 HINFPQ9BQA5 517 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 ATP2A1O14983 1001 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 BUB1BO60566 1050 aaPredicted RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 RPN1P04843 607 aaKnown RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 RAD51AP2Q09MP3 1159 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 UBE3CQ15386 1083 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 KRT25Q7Z3Z0 450 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 DAAM2Q86T65 1068 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 NBPF5PQ86XG9 351 aaPredicted RBP12.29□□□□□ -0.44
HPS4-202ENST00000398145 PLEKHA4Q9H4M7 779 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 BAIAP2L1Q9UHR4 511 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 ATP6V0A2Q9Y487 856 aa12.29□□□□□ -0.44
HPS4-202ENST00000398145 ZMYND10O75800 440 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 FLOT1O75955 427 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 CTNNA1P35221 906 aaKnown RBP12.28□□□□□ -0.44
HPS4-202ENST00000398145 PPARAQ07869 468 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 DYMQ7RTS9 669 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 ZNF710Q8N1W2 664 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 CFAP74Q9C0B2 1584 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 PEX26Q7Z412 305 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 GRAMD1CQ8IYS0 662 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 CACNA2D3Q8IZS8 1091 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 OSBP2Q969R2 916 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 TNKSO95271 1327 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 TMEM2Q9UHN6 1383 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 LRRC7Q96NW7 1537 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 PRR36Q9H6K5 1346 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 ARID4AP29374 1257 aaPredicted RBP12.28□□□□□ -0.44
HPS4-202ENST00000398145 ATP5DP30049 168 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 INTS8Q75QN2 995 aaKnown RBP12.28□□□□□ -0.44
HPS4-202ENST00000398145 USP37Q86T82 979 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 SMYD4Q8IYR2 804 aaPredicted RBP12.28□□□□□ -0.44
HPS4-202ENST00000398145 TRIM7Q9C029 511 aa12.28□□□□□ -0.44
HPS4-202ENST00000398145 ALDH8A1Q9H2A2 487 aaPredicted RBP12.28□□□□□ -0.44
HPS4-202ENST00000398145 USP6P35125 1406 aa12.27□□□□□ -0.44
HPS4-202ENST00000398145 ALDH3A1P30838 453 aa12.27□□□□□ -0.44
HPS4-202ENST00000398145 MRPL12P52815 198 aaKnown RBP12.27□□□□□ -0.44
HPS4-202ENST00000398145 HERC4Q5GLZ8 1057 aaPredicted RBP12.27□□□□□ -0.44
HPS4-202ENST00000398145 TTLL7Q6ZT98 887 aa12.27□□□□□ -0.44
HPS4-202ENST00000398145 HOMER2Q9NSB8 354 aa12.27□□□□□ -0.44
HPS4-202ENST00000398145 SAMM50Q9Y512 469 aa12.27□□□□□ -0.44
HPS4-202ENST00000398145 FAM13AO94988 1023 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 ATP11AP98196 1134 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 SEL1L2Q5TEA6 688 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 DHX40Q8IX18 779 aaKnown RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 SNX29Q8TEQ0 813 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 AIFM3Q96NN9 605 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 GPHNQ9NQX3 736 aaPredicted RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 MROH5Q6ZUA9 1318 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 EPB41P11171 864 aaKnown RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 IFNAR1P17181 557 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 EEF1GP26641 437 aaKnown RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 EEF2KMTQ96G04 330 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 IQCGQ9H095 443 aaKnown RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 MAGEA9P43362 315 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 KCNJ6P48051 423 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 CCZ1BP86790 482 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 CCZ1P86791 482 aaPredicted RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 GKAP1Q5VSY0 366 aaPredicted RBP12.27□□□□□ -0.45
HPS4-202ENST00000398145 KCTD16Q68DU8 428 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 ARMCX5Q6P1M9 558 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 ANKRD13CQ8N6S4 541 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 ORAI2Q96SN7 254 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 TUBGCP2Q9BSJ2 902 aa12.27□□□□□ -0.45
HPS4-202ENST00000398145 M0R2C6 588 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 CIAO1O76071 339 aa12.26□□□□□ -0.45
HPS4-202ENST00000398145 FMNL1O95466 1100 aaPredicted RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 LDHBP07195 334 aaKnown RBP12.26□□□□□ -0.45
HPS4-202ENST00000398145 PLCG2P16885 1265 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms