RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 MRPL11Q9Y3B7 192 aaKnown RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 KDM2BQ8NHM5 1336 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TLDC2A0PJX2 215 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 BEND3Q5T5X7 828 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 UTP14CQ5TAP6 766 aaKnown RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 GPBP1Q86WP2 473 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 MCF2L2Q86YR7 1114 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 IFNL3Q8IZI9 196 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 INSRP06213 1382 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 ZNF75DP51815 510 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 MAPK8IP2Q13387 824 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 SETDB1Q15047 1291 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CERKLQ49MI3 558 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 LRRC47Q8N1G4 583 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 IMPACTQ9P2X3 320 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 ADCY10Q96PN6 1610 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CRKLP46109 303 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 DNAJC21Q5F1R6 531 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 DCAF15Q66K64 600 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 C8orf74Q6P047 294 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 TTLL7Q6ZT98 887 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 NKIRAS1Q9NYS0 192 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CTTNBP2NLQ9P2B4 639 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 DDX25Q9UHL0 483 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 JAK2O60674 1132 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 GIGYF1O75420 1035 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CIB2O75838 187 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 PCCAP05165 728 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 GPR162Q16538 588 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 HS1BP3Q53T59 392 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 FYB2Q5VWT5 728 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 MYO1AQ9UBC5 1043 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CD2APQ9Y5K6 639 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 CPLX4Q7Z7G2 160 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 SMC1BQ8NDV3 1235 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 GABPB2Q8TAK5 448 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 TET3O43151 1660 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 PALM3A6NDB9 673 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 RNASE9P60153 205 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 GEN1Q17RS7 908 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 LONRF3Q496Y0 759 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 GTF3C6Q969F1 213 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 MRRFQ96E11 262 aaKnown RBP9.66□□□□□ -0.86
PTCD3-201ENST00000254630 TEKT3Q9BXF9 490 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 PSTPIP2Q9H939 334 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 PANK4Q9NVE7 773 aa9.66□□□□□ -0.86
PTCD3-201ENST00000254630 PABPC4Q13310 644 aaKnown RBP eCLIP9.65□□□□□ -0.861e-6■■■□□ 15
PTCD3-201ENST00000254630 ZNF365Q70YC5 407 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 CCDC125Q86Z20 511 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 BLIDQ8IZY5 108 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 SDR42E1Q8WUS8 393 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 ACTN4O43707 911 aaKnown RBP9.65□□□□□ -0.86
PTCD3-201ENST00000254630 DCUN1D2Q6PH85 259 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 NCAPG2Q86XI2 1143 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
PTCD3-201ENST00000254630 ZBTB9Q96C00 473 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 SERTAD1Q9UHV2 236 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 GMNNO75496 209 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 ALAS1P13196 640 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 USPL1Q5W0Q7 1092 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 SPC25Q9HBM1 224 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 KDM6BO15054 1643 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 ZEB2O60315 1214 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 TNNI1P19237 187 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 LTKP29376 864 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 TECP42680 631 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 PRR16Q569H4 304 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 GLG1Q92896 1179 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 KCNG1Q9UIX4 513 aa9.65□□□□□ -0.86
PTCD3-201ENST00000254630 K7ENM7 598 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 LRMPQ12912 555 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 ERCC6LQ2NKX8 1250 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 INTS8Q75QN2 995 aaKnown RBP9.65□□□□□ -0.87
PTCD3-201ENST00000254630 IFT20Q8IY31 132 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 AFAP1L2Q8N4X5 818 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 TIGD1Q96MW7 591 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 RBSNQ9H1K0 784 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 KAT6BQ8WYB5 2073 aa9.65□□□□□ -0.87
PTCD3-201ENST00000254630 CAPN2P17655 700 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 DPY19L2Q6NUT2 758 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 EVCP57679 992 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 FBXO11Q86XK2 927 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 ZBTB8OSQ8IWT0 167 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 RIOK1Q9BRS2 568 aaKnown RBP9.64□□□□□ -0.87
PTCD3-201ENST00000254630 SWAP70Q9UH65 585 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 M0R2C6 588 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 STAM2O75886 525 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 TNNC2P02585 160 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 LIG4P49917 911 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 CYP2J2P51589 502 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 ARHGAP44Q17R89 818 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 LRRC24Q50LG9 513 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 ZNF274Q96GC6 653 aaPredicted RBP9.64□□□□□ -0.87
PTCD3-201ENST00000254630 TSKSQ9UJT2 592 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 XDHP47989 1333 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 GADD45BO75293 160 aaPredicted RBP9.64□□□□□ -0.87
PTCD3-201ENST00000254630 KLHL30Q0D2K2 578 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 ME3Q16798 604 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 FAM160B1Q5W0V3 765 aa9.64□□□□□ -0.87
PTCD3-201ENST00000254630 VPS52Q8N1B4 723 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms