RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DUSP15Q9H1R2 295 aaPredicted RBP7.64□□□□□ -1.19
CD44-239ENST00000639002 MRS2Q9HD23 443 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 ZSWIM5Q9P217 1185 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 ZNF503-AS2A6NEH8 195 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 CHURC1-FNTBB4DL54 471 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.63□□□□□ -1.19
CD44-239ENST00000639002 ESR1P03372 595 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 CYP7A1P22680 504 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 GOLM1Q8NBJ4 401 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 TMEM40Q8WWA1 233 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 COX4I2Q96KJ9 171 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 KBTBD4Q9NVX7 518 aa7.63□□□□□ -1.19
CD44-239ENST00000639002 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.63□□□□□ -1.19
CD44-239ENST00000639002 GRIN3BO60391 1043 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 ETV3P41162 512 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 MRPL58Q14197 206 aaKnown RBP7.62□□□□□ -1.19
CD44-239ENST00000639002 ZNF648Q5T619 568 aaPredicted RBP7.62□□□□□ -1.19
CD44-239ENST00000639002 FBXL19Q6PCT2 694 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 FAM13CQ8NE31 585 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 PIWIL2Q8TC59 973 aaKnown RBP7.62□□□□□ -1.19
CD44-239ENST00000639002 CYB5D2Q8WUJ1 264 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 REV1Q9UBZ9 1251 aa7.62□□□□□ -1.19
CD44-239ENST00000639002 LRRN2O75325 713 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 BPNT1O95861 308 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 SRFP11831 508 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 ZSWIM9Q86XI8 627 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 SLFN12Q8IYM2 578 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 KCNQ5Q9NR82 932 aa7.61□□□□□ -1.19
CD44-239ENST00000639002 GREM1O60565 184 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 HTR3BO95264 441 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 PWP1Q13610 501 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 MPP2Q14168 576 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 LDLRAD1Q5T700 205 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 FAM196AQ6ZSG2 479 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 REC114Q7Z4M0 266 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 GIPC2Q8TF65 315 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 BCL2L13Q9BXK5 485 aa7.6□□□□□ -1.19
CD44-239ENST00000639002 GDNFP39905 211 aa7.59□□□□□ -1.19
CD44-239ENST00000639002 MESP2Q0VG99 397 aa7.59□□□□□ -1.19
CD44-239ENST00000639002 GAB4Q2WGN9 574 aa7.59□□□□□ -1.19
CD44-239ENST00000639002 SNAP47Q5SQN1 464 aa7.59□□□□□ -1.19
CD44-239ENST00000639002 DTWD2Q8NBA8 298 aa7.59□□□□□ -1.19
CD44-239ENST00000639002 BAHD1Q8TBE0 780 aaPredicted RBP7.59□□□□□ -1.19
CD44-239ENST00000639002 DNAJC25-GNG10A0A024R161 153 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 TLR3O15455 904 aaKnown RBP7.58□□□□□ -1.2
CD44-239ENST00000639002 AFMP43652 599 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 YARSP54577 528 aaKnown RBP7.58□□□□□ -1.2
CD44-239ENST00000639002 KCNMB1Q16558 191 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 RALGPS1Q5JS13 557 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 VWCEQ96DN2 955 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 ALPK1Q96QP1 1244 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 GPR62Q9BZJ7 368 aa7.58□□□□□ -1.2
CD44-239ENST00000639002 TPP2P29144 1249 aaPredicted RBP7.57□□□□□ -1.2
CD44-239ENST00000639002 ZNF124Q15973 351 aa7.57□□□□□ -1.2
CD44-239ENST00000639002 TMPRSS7Q7RTY8 843 aa7.57□□□□□ -1.2
CD44-239ENST00000639002 LIN37Q96GY3 246 aaPredicted RBP7.57□□□□□ -1.2
CD44-239ENST00000639002 LRRC3Q9BY71 257 aa7.57□□□□□ -1.2
CD44-239ENST00000639002 KLHL3Q9UH77 587 aa7.57□□□□□ -1.2
CD44-239ENST00000639002 BTBD11A6QL63 1104 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 EIF4A3P38919 411 aaKnown RBP7.56□□□□□ -1.2
CD44-239ENST00000639002 CRKP46108 304 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 JAG1P78504 1218 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 CREG2Q8IUH2 290 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 RNF141Q8WVD5 230 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 KREMEN1Q96MU8 473 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 KIF2CQ99661 725 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 ADAMTS10Q9H324 1103 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 BRMS1Q9HCU9 246 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 SLAMF8Q9P0V8 285 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 ADAMTS1Q9UHI8 967 aa7.56□□□□□ -1.2
CD44-239ENST00000639002 SLC22A31A6NKX4 558 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 FARP2O94887 1054 aaPredicted RBP7.55□□□□□ -1.2
CD44-239ENST00000639002 ERVFC1P60507 584 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 FZD5Q13467 585 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 DIEXFQ68CQ4 756 aaKnown RBP7.55□□□□□ -1.2
CD44-239ENST00000639002 TTC6Q86TZ1 520 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 TSPYL5Q86VY4 417 aaPredicted RBP7.55□□□□□ -1.2
CD44-239ENST00000639002 ZNF296Q8WUU4 475 aaPredicted RBP7.55□□□□□ -1.2
CD44-239ENST00000639002 KIRREL1Q96J84 757 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 CCDC74BQ96LY2 380 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 SP110Q9HB58 689 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 ROBO2Q9HCK4 1378 aa7.55□□□□□ -1.2
CD44-239ENST00000639002 ARID1BQ8NFD5 2236 aaPredicted RBP7.54□□□□□ -1.2
CD44-239ENST00000639002 LRRC10BA6NIK2 292 aa7.54□□□□□ -1.2
CD44-239ENST00000639002 GLI1P08151 1106 aa7.54□□□□□ -1.2
CD44-239ENST00000639002 MLANAQ16655 118 aa7.54□□□□□ -1.2
CD44-239ENST00000639002 ZNF326Q5BKZ1 582 aaKnown RBP7.54□□□□□ -1.2
CD44-239ENST00000639002 PCDHB14Q9Y5E9 798 aa7.54□□□□□ -1.2
CD44-239ENST00000639002 SHISA3A0PJX4 238 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 UBOX5O94941 541 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 ATE1O95260 518 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 PRR23BQ6ZRT6 265 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 TRIT1Q9H3H1 467 aaKnown RBP7.53□□□□□ -1.2
CD44-239ENST00000639002 GGT7Q9UJ14 662 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 TMEM59LQ9UK28 342 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 KCNH3Q9ULD8 1083 aa7.53□□□□□ -1.2
CD44-239ENST00000639002 SUPT16HQ9Y5B9 1047 aaKnown RBP7.53□□□□□ -1.2
CD44-239ENST00000639002 KRTAP4-8A0A0G2JLE6 195 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 RBM47A0AV96 593 aaKnown RBP7.52□□□□□ -1.21
CD44-239ENST00000639002 RGS13O14921 159 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms