RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MAP3K11Q16584 847 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 LILRA6Q6PI73 481 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 ATG14Q6ZNE5 492 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 MRPL41Q8IXM3 137 aaKnown RBP5.75□□□□□ -1.49
SCN1A-208ENST00000625916 TMEM87BQ96K49 555 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 MIR1-1HGQ9H1L0 117 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 ADAMTS10Q9H324 1103 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 WASH4PA8MWX3 477 aa5.74□□□□□ -1.49
SCN1A-208ENST00000625916 TPP2P29144 1249 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-208ENST00000625916 SLC6A19Q695T7 634 aa5.74□□□□□ -1.49
SCN1A-208ENST00000625916 CIAPIN1Q6FI81 312 aa5.74□□□□□ -1.49
SCN1A-208ENST00000625916 KCNN1Q92952 543 aa5.74□□□□□ -1.49
SCN1A-208ENST00000625916 TRIT1Q9H3H1 467 aaKnown RBP5.74□□□□□ -1.49
SCN1A-208ENST00000625916 ETV2O00321 342 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-208ENST00000625916 HPXP02790 462 aa5.73□□□□□ -1.49
SCN1A-208ENST00000625916 LIG3P49916 1009 aa5.73□□□□□ -1.49
SCN1A-208ENST00000625916 AGMOQ6ZNB7 445 aa5.73□□□□□ -1.49
SCN1A-208ENST00000625916 SLC26A8Q96RN1 970 aa5.73□□□□□ -1.49
SCN1A-208ENST00000625916 GPATCH2Q9NW75 528 aa5.73□□□□□ -1.49
SCN1A-208ENST00000625916 KRTAP9-7A8MTY7 169 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 TRHRP34981 398 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-208ENST00000625916 TSNAXIP1Q2TAA8 658 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 DIEXFQ68CQ4 756 aaKnown RBP5.72□□□□□ -1.49
SCN1A-208ENST00000625916 JARID2Q92833 1246 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-208ENST00000625916 Q96M66 194 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 DUSP15Q9H1R2 295 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-208ENST00000625916 CD320Q9NPF0 282 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 DUSP13Q9UII6 198 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 CEP131Q9UPN4 1083 aa5.72□□□□□ -1.49
SCN1A-208ENST00000625916 SMG5Q9UPR3 1016 aaKnown RBP5.72□□□□□ -1.49
SCN1A-208ENST00000625916 NUAK1O60285 661 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 PRPF40AO75400 957 aaKnown RBP5.71□□□□□ -1.5
SCN1A-208ENST00000625916 MED14OSP0DP75 135 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 GLDCP23378 1020 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 EGR3Q06889 387 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 AMIGO3Q86WK7 504 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 MCATQ8IVS2 390 aaKnown RBP5.71□□□□□ -1.5
SCN1A-208ENST00000625916 DNAJB8Q8NHS0 232 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 SYTL4Q96C24 671 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-208ENST00000625916 KRTAP4-2Q9BYR5 136 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 RNF32Q9H0A6 362 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 C19orf44Q9H6X5 657 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 ADAM30Q9UKF2 790 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 KCNH3Q9ULD8 1083 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 AK5Q9Y6K8 562 aa5.71□□□□□ -1.5
SCN1A-208ENST00000625916 TFE3P19532 575 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-208ENST00000625916 LTKP29376 864 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 RPL6Q02878 288 aaKnown RBP5.7□□□□□ -1.5
SCN1A-208ENST00000625916 KCNA1Q09470 495 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 GAB4Q2WGN9 574 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 TTLL10Q6ZVT0 673 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 ERICH6Q7L0X2 663 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 OXR1Q8N573 874 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 PDZD8Q8NEN9 1154 aa5.7□□□□□ -1.5
SCN1A-208ENST00000625916 ACSF2Q96CM8 615 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-208ENST00000625916 B8ZZF3 427 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 INHBBP09529 407 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 RLBP1P12271 317 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 PLCG1P19174 1290 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 LINC00310P59036 64 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 TSPYL5Q86VY4 417 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-208ENST00000625916 LILRA2Q8N149 483 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 DTWD2Q8NBA8 298 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 FAM13CQ8NE31 585 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 CYB5D2Q8WUJ1 264 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 DHX38Q92620 1227 aaKnown RBP5.69□□□□□ -1.5
SCN1A-208ENST00000625916 DUSP9Q99956 384 aaKnown RBP5.69□□□□□ -1.5
SCN1A-208ENST00000625916 GPR62Q9BZJ7 368 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 SLC6A17Q9H1V8 727 aa5.69□□□□□ -1.5
SCN1A-208ENST00000625916 FITM1A5D6W6 292 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 PRRG2O14669 202 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 ZGLP1P0C6A0 271 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 TNNI2P48788 182 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 YARSP54577 528 aaKnown RBP5.68□□□□□ -1.5
SCN1A-208ENST00000625916 MEI1Q5TIA1 1274 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 ZNF605Q86T29 641 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 PPP1R13LQ8WUF5 828 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 IRF2BPLQ9H1B7 796 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 RAPGEFL1Q9UHV5 662 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 TLR6Q9Y2C9 796 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 PCDHA11Q9Y5I1 949 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 CORINQ9Y5Q5 1042 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 NCANO14594 1321 aa5.68□□□□□ -1.5
SCN1A-208ENST00000625916 UPK3BL1B0FP48 263 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 UPK3BL2E5RIL1 263 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 BPNT1O95861 308 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 SRFP11831 508 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 TMEM132EQ6IEE7 984 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 IRF2BP1Q8IU81 584 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 RNF19AQ9NV58 838 aa5.67□□□□□ -1.5
SCN1A-208ENST00000625916 LRRN2O75325 713 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 PDE6BP35913 854 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 CTSWP56202 376 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 EAPPQ56P03 285 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-208ENST00000625916 SPPL2CQ8IUH8 684 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 RNF141Q8WVD5 230 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 MCOLN1Q9GZU1 580 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 SP110Q9HB58 689 aa5.66□□□□□ -1.5
SCN1A-208ENST00000625916 CWC22Q9HCG8 908 aaKnown RBP5.66□□□□□ -1.5
SCN1A-208ENST00000625916 NR0B2Q15466 257 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms