RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 TBC1D10BQ4KMP7 808 aaPredicted RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 TMEM179Q6ZVK1 233 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 NOL8Q76FK4 1167 aaKnown RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 NYAP2Q9P242 653 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 PARP14Q460N5 1801 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 AKR1B1P15121 316 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 PDCP20941 246 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 EPS15P42566 896 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 NFXL1Q6ZNB6 911 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 CRACR2BQ8N4Y2 399 aaPredicted RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 ZKSCAN3Q9BRR0 538 aa13.72□□□□□ -0.21
PDPN-211ENST00000617617 LARP6Q9BRS8 491 aaKnown RBP13.72□□□□□ -0.21
PDPN-211ENST00000617617 IFNAR1P17181 557 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 RASA3Q14644 834 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 GRM4Q14833 912 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 CERKLQ49MI3 558 aaPredicted RBP13.71□□□□□ -0.21
PDPN-211ENST00000617617 FANCBQ8NB91 859 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 VEZTQ9HBM0 779 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 ZNF112Q9UJU3 913 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 KIF3AQ9Y496 699 aa13.71□□□□□ -0.21
PDPN-211ENST00000617617 TTLL1O95922 423 aa13.71□□□□□ -0.22
PDPN-211ENST00000617617 SNHG28P0DPA3 235 aa13.71□□□□□ -0.22
PDPN-211ENST00000617617 ZSCAN29Q8IWY8 852 aaPredicted RBP13.71□□□□□ -0.22
PDPN-211ENST00000617617 FAM177A1Q8N128 213 aaPredicted RBP13.71□□□□□ -0.22
PDPN-211ENST00000617617 TRIM34Q9BYJ4 488 aa13.71□□□□□ -0.22
PDPN-211ENST00000617617 KANSL2Q9H9L4 492 aa13.71□□□□□ -0.22
PDPN-211ENST00000617617 GOLGA8AA7E2F4 631 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 GJB2P29033 226 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 RTN1Q16799 776 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 CEP95Q96GE4 821 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 TMEM47Q9BQJ4 181 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 LZTS2Q9BRK4 669 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 TMEM39BQ9GZU3 492 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 KAT14Q9H8E8 782 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.7□□□□□ -0.22
PDPN-211ENST00000617617 SSC5DA1L4H1 1573 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 IQCA1LA6NCM1 817 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 PHF20L1A8MW92 1017 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 NMT2O60551 498 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 BRD1O95696 1058 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 GUCY1A2P33402 732 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 FUT2Q10981 343 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 CPLX2Q6PUV4 134 aaKnown RBP13.7□□□□□ -0.22
PDPN-211ENST00000617617 NBPF11Q86T75 865 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 STK11IPQ8N1F8 1099 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 DEFB129Q9H1M3 183 aa13.7□□□□□ -0.22
PDPN-211ENST00000617617 PTPRFP10586 1907 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 CDC27P30260 824 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 PTPDC1A2A3K4 754 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 FMNL1O95466 1100 aaPredicted RBP13.69□□□□□ -0.22
PDPN-211ENST00000617617 KIF5BP33176 963 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 GNAQP50148 359 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 STK3Q13188 491 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 ABCB5Q2M3G0 1257 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 SLC4A8Q2Y0W8 1093 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 PNMA1Q8ND90 353 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 GMCL1P1Q8NEA9 526 aa13.69□□□□□ -0.22
PDPN-211ENST00000617617 WDR33Q9C0J8 1336 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 RBM26Q5T8P6 1007 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 ANGEL2Q5VTE6 544 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 DCAF15Q66K64 600 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 RNF26Q9BY78 433 aaPredicted RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 RBM27Q9P2N5 1060 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 LOC285556D6RIA3 1793 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 ASTN2O75129 1339 aaPredicted RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 PALM3A6NDB9 673 aaPredicted RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 FDPSP14324 419 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 CCT2P78371 535 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 TMTC3Q6ZXV5 915 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 NCOA5Q9HCD5 579 aaKnown RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 TCHHQ07283 1943 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 TRPM7Q96QT4 1865 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 POTECB2RU33 542 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 CAP2P40123 477 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 PNMA8AQ86V59 439 aaPredicted RBP13.68□□□□□ -0.22
PDPN-211ENST00000617617 MICU3Q86XE3 530 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 GGA3Q9NZ52 723 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 ZDHHC9Q9Y397 364 aa13.68□□□□□ -0.22
PDPN-211ENST00000617617 SYT1P21579 422 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 EPHX2P34913 555 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 RRP1BQ14684 758 aaKnown RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 NOL9Q5SY16 702 aaKnown RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 SPRYD3Q8NCJ5 442 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 WASF1Q92558 559 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 MAD2L2Q9UI95 211 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 GOLGB1Q14789 3259 aaKnown RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 PRPF3O43395 683 aaKnown RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 CTNND1O60716 968 aaKnown RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 SIAH1Q8IUQ4 282 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 CTCFLQ8NI51 663 aaPredicted RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 ZNF341Q9BYN7 854 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 TAF1DQ9H5J8 278 aaPredicted RBP13.67□□□□□ -0.22
PDPN-211ENST00000617617 CABP5Q9NP86 173 aa13.67□□□□□ -0.22
PDPN-211ENST00000617617 CPLX1O14810 134 aa13.66□□□□□ -0.22
PDPN-211ENST00000617617 STX6O43752 255 aa13.66□□□□□ -0.22
PDPN-211ENST00000617617 JAK2O60674 1132 aa13.66□□□□□ -0.22
PDPN-211ENST00000617617 ADD1P35611 737 aaKnown RBP13.66□□□□□ -0.22
PDPN-211ENST00000617617 ASPRV1Q53RT3 343 aa13.66□□□□□ -0.22
PDPN-211ENST00000617617 DCAF4Q8WV16 495 aa13.66□□□□□ -0.22
PDPN-211ENST00000617617 SPZ1Q9BXG8 430 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms