RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PPEF1O14829 653 aaPredicted RBP22.72■■□□□ 1.23
UPF1-207ENST00000599848 TIMM10P62072 90 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 SARNPP82979 210 aaKnown RBP22.72■■□□□ 1.23
UPF1-207ENST00000599848 MSL1Q68DK7 614 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 FAM114A2Q9NRY5 505 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 FEZ2Q9UHY8 353 aaPredicted RBP22.72■■□□□ 1.23
UPF1-207ENST00000599848 DDX39AO00148 427 aaKnown RBP22.72■■□□□ 1.23
UPF1-207ENST00000599848 RPS6KB1P23443 525 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 SETDB1Q15047 1291 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 SYCE1Q8N0S2 351 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 SKILP12757 684 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 ICA1Q05084 483 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 HAUS1Q96CS2 278 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 NCAPGQ9BPX3 1015 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 ARFGAP3Q9NP61 516 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 NOL3O60936 208 aaKnown RBP22.71■■□□□ 1.23
UPF1-207ENST00000599848 NT5C2P49902 561 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 RBM10P98175 930 aaKnown RBP22.71■■□□□ 1.23
UPF1-207ENST00000599848 DALRD3Q5D0E6 543 aaKnown RBP22.71■■□□□ 1.23
UPF1-207ENST00000599848 VPS52Q8N1B4 723 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 RETREG2Q8NC44 543 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 TESPA1A2RU30 521 aaPredicted RBP22.71■■□□□ 1.23
UPF1-207ENST00000599848 CHMLP26374 656 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 TEKT3Q9BXF9 490 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 ABT1Q9ULW3 272 aaKnown RBP22.71■■□□□ 1.23
UPF1-207ENST00000599848 KAT6BQ8WYB5 2073 aa22.71■■□□□ 1.23
UPF1-207ENST00000599848 SLC12A2P55011 1212 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 CCDC84Q86UT8 332 aaPredicted RBP22.7■■□□□ 1.22
UPF1-207ENST00000599848 CFAP74Q9C0B2 1584 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 PPP1R21Q6ZMI0 780 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 FBXO11Q86XK2 927 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 RNF169Q8NCN4 708 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 KIAA0556O60303 1618 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 AK2P54819 239 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 CBX1P83916 185 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 PRIMPOLQ96LW4 560 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 DBNDD2Q9BQY9 259 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 GIGYF1O75420 1035 aaPredicted RBP22.7■■□□□ 1.22
UPF1-207ENST00000599848 FLOT1O75955 427 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 PCCAP05165 728 aaPredicted RBP22.7■■□□□ 1.22
UPF1-207ENST00000599848 TMX1Q9H3N1 280 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 THRAP3Q9Y2W1 955 aaKnown RBP22.7■■□□□ 1.22
UPF1-207ENST00000599848 AFG3L2Q9Y4W6 797 aa22.7■■□□□ 1.22
UPF1-207ENST00000599848 TNNI1P19237 187 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 SLC9C1Q4G0N8 1177 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 METTL23Q86XA0 190 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 MRPL44Q9H9J2 332 aaKnown RBP22.69■■□□□ 1.22
UPF1-207ENST00000599848 TAF5LO75529 589 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 FAM160A1Q05DH4 1040 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 F8W8V4 182 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 LIG4P49917 911 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 GIMAP6Q6P9H5 292 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 DIS3L2Q8IYB7 885 aaKnown RBP22.69■■□□□ 1.22
UPF1-207ENST00000599848 GTF3C6Q969F1 213 aa22.69■■□□□ 1.22
UPF1-207ENST00000599848 CAPN9O14815 690 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 NFKBIAP25963 317 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 AOC3Q16853 763 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 CSGALNACT2Q8N6G5 542 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 IFT122Q9HBG6 1241 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 ATP8B3O60423 1300 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 GCNT3O95395 438 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 ANO1Q5XXA6 986 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 ZBTB38Q8NAP3 1195 aaPredicted RBP22.68■■□□□ 1.22
UPF1-207ENST00000599848 MLKLQ8NB16 471 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 DSCC1Q9BVC3 393 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 LOC102724428A0A0B4J2F2 783 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 SIK1P57059 783 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 CCDC89Q8N998 374 aa22.68■■□□□ 1.22
UPF1-207ENST00000599848 ARHGEF12Q9NZN5 1544 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 CALCOCO1Q9P1Z2 691 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 ZNF532Q9HCE3 1301 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 TCP10L2B9ZVM9 353 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 NACC1Q96RE7 527 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 IL6STP40189 918 aaPredicted RBP22.67■■□□□ 1.22
UPF1-207ENST00000599848 ABCB5Q2M3G0 1257 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 ATP6V0A1Q93050 837 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 PLIN2Q99541 437 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 TSKSQ9UJT2 592 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 HOXD10P28358 340 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 LARSQ9P2J5 1176 aaKnown RBP22.67■■□□□ 1.22
UPF1-207ENST00000599848 AKR1B15C9JRZ8 316 aaPredicted RBP22.67■■□□□ 1.22
UPF1-207ENST00000599848 XPAP23025 273 aaPredicted RBP22.67■■□□□ 1.22
UPF1-207ENST00000599848 IL13P35225 146 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 STX17P56962 302 aa22.67■■□□□ 1.22
UPF1-207ENST00000599848 ATP7AQ04656 1500 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 TLR3O15455 904 aaKnown RBP22.66■■□□□ 1.22
UPF1-207ENST00000599848 PPARAQ07869 468 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 PAK1Q13153 545 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 C2orf69Q8N8R5 385 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 ZNF496Q96IT1 587 aaPredicted RBP22.66■■□□□ 1.22
UPF1-207ENST00000599848 GPATCH4Q5T3I0 446 aaKnown RBP22.66■■□□□ 1.22
UPF1-207ENST00000599848 CABP7Q86V35 215 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 CSRNP1Q96S65 589 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 PARD3Q8TEW0 1356 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 NPC1L1Q9UHC9 1359 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 PHKG2P15735 406 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 ADAMTS12P58397 1594 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 CHL1O00533 1208 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 DNM1Q05193 864 aaKnown RBP22.66■■□□□ 1.22
UPF1-207ENST00000599848 HADHQ16836 314 aaKnown RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms