RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 TATDN1Q6P1N9 297 aa19.31■□□□□ 0.68
USHBP1-206ENST00000596436 TRMT44Q8IYL2 757 aaKnown RBP19.31■□□□□ 0.68
USHBP1-206ENST00000596436 CRACR2BQ8N4Y2 399 aaPredicted RBP19.31■□□□□ 0.68
USHBP1-206ENST00000596436 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.31■□□□□ 0.68
USHBP1-206ENST00000596436 GTF3C2Q8WUA4 911 aaPredicted RBP19.31■□□□□ 0.68
USHBP1-206ENST00000596436 NUDT12Q9BQG2 462 aa19.31■□□□□ 0.68
USHBP1-206ENST00000596436 COL6A1P12109 1028 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 PRKAR2AP13861 404 aaKnown RBP19.3■□□□□ 0.68
USHBP1-206ENST00000596436 CYP2B6P20813 491 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 ERVK-9P63128 1117 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 ERVK-24P63145 666 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 Q3C1V9 767 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 MORN1Q5T089 497 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 CERS3Q8IU89 383 aa19.3■□□□□ 0.68
USHBP1-206ENST00000596436 OTUD7AQ8TE49 926 aaPredicted RBP19.3■□□□□ 0.68
USHBP1-206ENST00000596436 PFASO15067 1338 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 HLA-DOAP06340 250 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 ATP5JP18859 108 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 DYNLL1P63167 89 aaKnown RBP19.29■□□□□ 0.68
USHBP1-206ENST00000596436 TSHZ3Q63HK5 1081 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 GPR153Q6NV75 609 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 TMED8Q6PL24 325 aaPredicted RBP19.29■□□□□ 0.68
USHBP1-206ENST00000596436 C7orf61Q8IZ16 206 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 EDC3Q96F86 508 aaKnown RBP19.29■□□□□ 0.68
USHBP1-206ENST00000596436 LRCH3Q96II8 777 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 EHD4Q9H223 541 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 PORCNQ9H237 461 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 BOLA2Q9H3K6 86 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 C11orf49Q9H6J7 331 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 FRMPD3Q5JV73 1810 aa19.29■□□□□ 0.68
USHBP1-206ENST00000596436 CACNB2Q08289 660 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-206ENST00000596436 LHX8Q68G74 356 aa19.28■□□□□ 0.68
USHBP1-206ENST00000596436 USP17L2Q6R6M4 530 aa19.28■□□□□ 0.68
USHBP1-206ENST00000596436 SMC5Q8IY18 1101 aa19.28■□□□□ 0.68
USHBP1-206ENST00000596436 DNAJC2Q99543 621 aaKnown RBP19.28■□□□□ 0.68
USHBP1-206ENST00000596436 TRIM34Q9BYJ4 488 aa19.28■□□□□ 0.68
USHBP1-206ENST00000596436 RWDD1Q9H446 243 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-206ENST00000596436 SAP30BPQ9UHR5 308 aaKnown RBP19.28■□□□□ 0.68
USHBP1-206ENST00000596436 MYH7P12883 1935 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 GH2P01242 217 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 CYP7A1P22680 504 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 ANKRD45Q5TZF3 282 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 GPR142Q7Z601 462 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 ECHDC1Q9NTX5 307 aa19.27■□□□□ 0.68
USHBP1-206ENST00000596436 SALL3Q9BXA9 1300 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 LAMA2P24043 3122 aaKnown RBP19.26■□□□□ 0.67
USHBP1-206ENST00000596436 GOLIM4O00461 696 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 CNMDO75829 334 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 IDH1O75874 414 aaKnown RBP19.26■□□□□ 0.67
USHBP1-206ENST00000596436 ZKSCAN1P17029 563 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-206ENST00000596436 RGS2P41220 211 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 LBX2Q6XYB7 198 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 PLEKHH3Q7Z736 793 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 APBA2Q99767 749 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 HAUS7Q99871 368 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 KIAA1683Q9H0B3 1180 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 SERPINB13Q9UIV8 391 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 ZMYND8Q9ULU4 1186 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-206ENST00000596436 RABGAP1Q9Y3P9 1069 aa19.26■□□□□ 0.67
USHBP1-206ENST00000596436 CCL14Q16627 93 aa19.25■□□□□ 0.67
USHBP1-206ENST00000596436 LRIT3Q3SXY7 679 aa19.25■□□□□ 0.67
USHBP1-206ENST00000596436 PAG1Q9NWQ8 432 aa19.25■□□□□ 0.67
USHBP1-206ENST00000596436 ZNF236Q9UL36 1845 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L15C9J2P7 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L13C9JLJ4 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L11C9JVI0 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L18D6R9N7 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L22D6RA61 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L17D6RBQ6 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L19D6RCP7 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L20D6RJB6 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 IGHA2P01877 340 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 CCND3P30281 292 aaPredicted RBP19.24■□□□□ 0.67
USHBP1-206ENST00000596436 USP17L24Q0WX57 530 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 MAP2K5Q13163 448 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 CATSPERGQ6ZRH7 1159 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 MAGEB6Q8N7X4 407 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 MIGA1Q8NAN2 632 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 PAGR1Q9BTK6 254 aa19.24■□□□□ 0.67
USHBP1-206ENST00000596436 NAV1Q8NEY1 1877 aa19.23■□□□□ 0.67
USHBP1-206ENST00000596436 HOXC6P09630 235 aa19.23■□□□□ 0.67
USHBP1-206ENST00000596436 MAGEA10P43363 369 aaPredicted RBP19.23■□□□□ 0.67
USHBP1-206ENST00000596436 USP14P54578 494 aa19.23■□□□□ 0.67
USHBP1-206ENST00000596436 TTF1Q15361 905 aaPredicted RBP19.23■□□□□ 0.67
USHBP1-206ENST00000596436 B4GALNT3Q6L9W6 998 aa19.23■□□□□ 0.67
USHBP1-206ENST00000596436 PI4K2BQ8TCG2 481 aa19.23■□□□□ 0.67
USHBP1-206ENST00000596436 RIOK1Q9BRS2 568 aaKnown RBP19.23■□□□□ 0.67
USHBP1-206ENST00000596436 A0A0G2JMZ2 1700 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 SYN1P17600 705 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 VCAM1P19320 739 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 GUCY1A2P33402 732 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 SHMT1P34896 483 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 USP5P45974 858 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 GABPAQ06546 454 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 MAP3K12Q12852 859 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 TTC6Q86TZ1 520 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 TDHQ8IZJ6 230 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 GPATCH3Q96I76 525 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 LNPKQ9C0E8 428 aa19.22■□□□□ 0.67
USHBP1-206ENST00000596436 TTC41PQ6P2S7 1318 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms