RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 POLR2DO15514 142 aaKnown RBP13.72□□□□□ -0.21
LIG1-207ENST00000594759 KCNQ3O43525 872 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 SEMA3FQ13275 785 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 BICDL1Q6ZP65 573 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 ARHGEF25Q86VW2 580 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 ZNF513Q8N8E2 541 aaPredicted RBP13.72□□□□□ -0.21
LIG1-207ENST00000594759 NDUFB9Q9Y6M9 179 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 ABCA9Q8IUA7 1624 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 SMTNP53814 917 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 MTF1Q14872 753 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 POSTNQ15063 836 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 TRIM58Q8NG06 486 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 TAF11Q15544 211 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 FMR1NBQ8N0W7 255 aaPredicted RBP13.72□□□□□ -0.21
LIG1-207ENST00000594759 IL17REQ8NFR9 667 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 PANX2Q96RD6 677 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 OSBPL9Q96SU4 736 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 FAM167BQ9BTA0 163 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 KCND1Q9NSA2 647 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 SBNO1A3KN83 1393 aa13.72□□□□□ -0.21
LIG1-207ENST00000594759 SMIM23A6NLE4 172 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 TCHHQ07283 1943 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 TBC1D1Q86TI0 1168 aaPredicted RBP13.71□□□□□ -0.21
LIG1-207ENST00000594759 CEP126Q9P2H0 1117 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 SPHKAPQ2M3C7 1700 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 MED14O60244 1454 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 MAP3K5Q99683 1374 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 ANKRD13DQ6ZTN6 518 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 NOA1Q8NC60 698 aaKnown RBP13.71□□□□□ -0.21
LIG1-207ENST00000594759 LINC00301Q8NCQ3 95 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 LRRC45Q96CN5 670 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 ATG3Q9NT62 314 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 HAUS2Q9NVX0 235 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 SHROOM2Q13796 1616 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 RNASE9P60153 205 aaKnown RBP13.71□□□□□ -0.21
LIG1-207ENST00000594759 NLRP14Q86W24 1093 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 MSANTD4Q8NCY6 345 aa13.71□□□□□ -0.21
LIG1-207ENST00000594759 SYNRGQ9UMZ2 1314 aa13.71□□□□□ -0.22
LIG1-207ENST00000594759 RNF10Q8N5U6 811 aaKnown RBP13.71□□□□□ -0.22
LIG1-207ENST00000594759 CCHCR1Q8TD31 782 aa13.71□□□□□ -0.22
LIG1-207ENST00000594759 TRIM47Q96LD4 638 aa13.71□□□□□ -0.22
LIG1-207ENST00000594759 ANKZF1Q9H8Y5 726 aa13.71□□□□□ -0.22
LIG1-207ENST00000594759 EIF4E1BA6NMX2 242 aaKnown RBP13.7□□□□□ -0.22
LIG1-207ENST00000594759 METAP2P50579 478 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIG1-207ENST00000594759 TNNC1P63316 161 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 C2orf54Q08AI8 447 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 OR8K1Q8NGG5 319 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 IL17RAQ96F46 866 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 TRIM7Q9C029 511 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 POLD4Q9HCU8 107 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 CDHR2Q9BYE9 1310 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 REREQ9P2R6 1566 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 PFDN1O60925 122 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 AP1G2O75843 785 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 GUCY1A3Q02108 690 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 KRT71Q3SY84 523 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 CCDC155Q8N6L0 562 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 CCDC197Q8NCU1 140 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 TSGA10Q9BZW7 698 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 MRPL44Q9H9J2 332 aaKnown RBP13.7□□□□□ -0.22
LIG1-207ENST00000594759 TAB2Q9NYJ8 693 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 G3BP2Q9UN86 482 aaKnown RBP13.7□□□□□ -0.22
LIG1-207ENST00000594759 CETN3O15182 167 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 DRP2Q13474 957 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 PREPLQ4J6C6 727 aaPredicted RBP13.7□□□□□ -0.22
LIG1-207ENST00000594759 RASIP1Q5U651 963 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 CYB5D1Q6P9G0 228 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 CCDC13Q8IYE1 715 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
LIG1-207ENST00000594759 GBP5Q96PP8 586 aa13.7□□□□□ -0.22
LIG1-207ENST00000594759 G3V3G9 751 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 SNRPA1P09661 255 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 DCAF8Q5TAQ9 597 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 CCT8L2Q96SF2 557 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 CEP152O94986 1710 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 KIAA0232Q92628 1395 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 SRGAP2O75044 1071 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 RXRAP19793 462 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 SEPT14Q6ZU15 432 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 NSUN7Q8NE18 718 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 ZCRB1Q8TBF4 217 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 A2ML1A8K2U0 1454 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 ATP10DQ9P241 1426 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 RNMTO43148 476 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 PPP1R37O75864 691 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 STARD3NLO95772 234 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 CTNNA1P35221 906 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 MRPS25P82663 173 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 SLC7A5Q01650 507 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 SSRP1Q08945 709 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 TOB2Q14106 344 aaPredicted RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 CEP128Q6ZU80 1094 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 PPFIBP2Q8ND30 876 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 ZNF473Q8WTR7 871 aaKnown RBP13.69□□□□□ -0.22
LIG1-207ENST00000594759 NSMCE1Q8WV22 266 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIG1-207ENST00000594759 EPN3Q9H201 632 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 RAB21Q9UL25 225 aa13.69□□□□□ -0.22
LIG1-207ENST00000594759 ZNF213O14771 459 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 USP5P45974 858 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms