RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 C16orf86Q6ZW13 317 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 ACER1Q8TDN7 264 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 EVI5LQ96CN4 794 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 SEC62Q99442 399 aaKnown RBP28.64■■■□□ 2.18
SHMT1-206ENST00000579558 MGAMO43451 1857 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 HOXD10P28358 340 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 HOXA7P31268 230 aaPredicted RBP28.63■■■□□ 2.17
SHMT1-206ENST00000579558 GCLCP48506 637 aaPredicted RBP28.63■■■□□ 2.17
SHMT1-206ENST00000579558 USP14P54578 494 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 PRMT2P55345 433 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 ZMYM1Q5SVZ6 1142 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 TMEM179Q6ZVK1 233 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 HTTP42858 3142 aa28.63■■■□□ 2.17
SHMT1-206ENST00000579558 APPP05067 770 aa28.62■■■□□ 2.17
SHMT1-206ENST00000579558 SBK1Q52WX2 424 aa28.62■■■□□ 2.17
SHMT1-206ENST00000579558 C12orf42Q96LP6 360 aa28.62■■■□□ 2.17
SHMT1-206ENST00000579558 KIAA1683Q9H0B3 1180 aa28.62■■■□□ 2.17
SHMT1-206ENST00000579558 SRRDQ9UH36 339 aa28.62■■■□□ 2.17
SHMT1-206ENST00000579558 AKR1B1P15121 316 aa28.61■■■□□ 2.17
SHMT1-206ENST00000579558 TDO2P48775 406 aa28.61■■■□□ 2.17
SHMT1-206ENST00000579558 FAM110CQ1W6H9 321 aa28.61■■■□□ 2.17
SHMT1-206ENST00000579558 CCDC17Q96LX7 622 aa28.61■■■□□ 2.17
SHMT1-206ENST00000579558 EPB41L4AQ9HCS5 686 aaPredicted RBP28.61■■■□□ 2.17
SHMT1-206ENST00000579558 MLLT1Q03111 559 aaPredicted RBP28.6■■■□□ 2.17
SHMT1-206ENST00000579558 SLC9C1Q4G0N8 1177 aa28.6■■■□□ 2.17
SHMT1-206ENST00000579558 ARMC5Q96C12 935 aa28.6■■■□□ 2.17
SHMT1-206ENST00000579558 MINDY4BA8MYZ0 360 aa28.59■■■□□ 2.17
SHMT1-206ENST00000579558 PATL2C9JE40 543 aaKnown RBP28.59■■■□□ 2.17
SHMT1-206ENST00000579558 P2RX7Q99572 595 aaKnown RBP28.59■■■□□ 2.17
SHMT1-206ENST00000579558 MYPNQ86TC9 1320 aa28.59■■■□□ 2.17
SHMT1-206ENST00000579558 HERVK_113P62684 666 aa28.58■■■□□ 2.17
SHMT1-206ENST00000579558 NACAP1Q9BZK3 213 aa28.58■■■□□ 2.17
SHMT1-206ENST00000579558 TRIM6-TRIM34B2RNG4 842 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 TNPO2O14787 897 aaKnown RBP28.57■■■□□ 2.16
SHMT1-206ENST00000579558 NBPF11Q86T75 865 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 PLEKHM2Q8IWE5 1019 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 IFNL3Q8IZI9 196 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 STK11IPQ8N1F8 1099 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 RAET1EQ8TD07 263 aa28.57■■■□□ 2.16
SHMT1-206ENST00000579558 A0A1W2PRG0 241 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L15C9J2P7 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L13C9JLJ4 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L11C9JVI0 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L18D6R9N7 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L22D6RA61 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L17D6RBQ6 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L19D6RCP7 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L20D6RJB6 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 VCAM1P19320 739 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 ICA1Q05084 483 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 PRKCZQ05513 592 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 USP17L24Q0WX57 530 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 CLEC10AQ8IUN9 316 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 ROBO3Q96MS0 1386 aa28.56■■■□□ 2.16
SHMT1-206ENST00000579558 CCDC129Q6ZRS4 1044 aa28.55■■■□□ 2.16
SHMT1-206ENST00000579558 SH3TC2Q8TF17 1288 aa28.55■■■□□ 2.16
SHMT1-206ENST00000579558 ZNF333Q96JL9 665 aa28.55■■■□□ 2.16
SHMT1-206ENST00000579558 ARHGEF10LQ9HCE6 1279 aa28.55■■■□□ 2.16
SHMT1-206ENST00000579558 MORF4L1Q9UBU8 362 aa28.55■■■□□ 2.16
SHMT1-206ENST00000579558 GTF3C2Q8WUA4 911 aaPredicted RBP28.54■■■□□ 2.16
SHMT1-206ENST00000579558 RILPL2Q969X0 211 aa28.54■■■□□ 2.16
SHMT1-206ENST00000579558 NAPBQ9H115 298 aa28.54■■■□□ 2.16
SHMT1-206ENST00000579558 OSBPL3Q9H4L5 887 aa28.54■■■□□ 2.16
SHMT1-206ENST00000579558 MKNK2Q9HBH9 465 aa28.54■■■□□ 2.16
SHMT1-206ENST00000579558 GABRQQ9UN88 632 aa28.54■■■□□ 2.16
SHMT1-206ENST00000579558 CATSPERGQ6ZRH7 1159 aa28.53■■■□□ 2.16
SHMT1-206ENST00000579558 COA7Q96BR5 231 aa28.53■■■□□ 2.16
SHMT1-206ENST00000579558 RPAP3Q9H6T3 665 aaPredicted RBP28.53■■■□□ 2.16
SHMT1-206ENST00000579558 SH2D4AQ9H788 454 aa28.53■■■□□ 2.16
SHMT1-206ENST00000579558 HELLSQ9NRZ9 838 aa28.53■■■□□ 2.16
SHMT1-206ENST00000579558 RASA1P20936 1047 aa28.52■■■□□ 2.16
SHMT1-206ENST00000579558 TICAM2Q86XR7 235 aa28.52■■■□□ 2.16
SHMT1-206ENST00000579558 SIAH1Q8IUQ4 282 aa28.52■■■□□ 2.16
SHMT1-206ENST00000579558 TXNRD2Q9NNW7 524 aa28.52■■■□□ 2.16
SHMT1-206ENST00000579558 PEX10O60683 326 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 GPRC5AQ8NFJ5 357 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 FAM227BQ96M60 508 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 PAGR1Q9BTK6 254 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 KANSL2Q9H9L4 492 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 ZNF287Q9HBT7 754 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 RBPJLQ9UBG7 517 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 TMX2Q9Y320 296 aa28.51■■■□□ 2.15
SHMT1-206ENST00000579558 GRK4P32298 578 aa28.5■■■□□ 2.15
SHMT1-206ENST00000579558 FLT3LGP49771 235 aa28.5■■■□□ 2.15
SHMT1-206ENST00000579558 ATP2B2Q01814 1243 aa28.5■■■□□ 2.15
SHMT1-206ENST00000579558 A0A0D9SFI3 127 aa28.49■■■□□ 2.15
SHMT1-206ENST00000579558 MYCP01106 439 aaPredicted RBP28.49■■■□□ 2.15
SHMT1-206ENST00000579558 EEF2P13639 858 aaKnown RBP28.49■■■□□ 2.15
SHMT1-206ENST00000579558 TMEM106CQ9BVX2 250 aa28.49■■■□□ 2.15
SHMT1-206ENST00000579558 CENPFP49454 3210 aa28.49■■■□□ 2.15
SHMT1-206ENST00000579558 GREB1LQ9C091 1923 aaPredicted RBP28.49■■■□□ 2.15
SHMT1-206ENST00000579558 DOCK3Q8IZD9 2030 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 RBBP6Q7Z6E9 1792 aaKnown RBP28.48■■■□□ 2.15
SHMT1-206ENST00000579558 POTEFA5A3E0 1075 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 FOXP2O15409 715 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 ERVK-9P63128 1117 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 ERVK-24P63145 666 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 PPARAQ07869 468 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 NMIQ13287 307 aaPredicted RBP28.48■■■□□ 2.15
SHMT1-206ENST00000579558 MCMDC2Q4G0Z9 681 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms