RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
SS18-210ENST00000578700 GJD2Q9UKL4 321 aa12.12□□□□□ -0.47
SS18-210ENST00000578700 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 RAD50Q92878 1312 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 RFX7Q2KHR2 1363 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 SGSM2O43147 1006 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
SS18-210ENST00000578700 IRX3P78415 501 aaPredicted RBP12.11□□□□□ -0.47
SS18-210ENST00000578700 CWC27Q6UX04 472 aaKnown RBP12.11□□□□□ -0.47
SS18-210ENST00000578700 ANKLE1Q8NAG6 615 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 FAM163AQ96GL9 167 aaPredicted RBP12.11□□□□□ -0.47
SS18-210ENST00000578700 HAUS7Q99871 368 aa12.11□□□□□ -0.47
SS18-210ENST00000578700 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
SS18-210ENST00000578700 LOC285556D6RIA3 1793 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 GPR75-ASB3A0A0A6YYF3 556 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 USP17L5A8MUK1 530 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 TBC1D12O60347 775 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 CAP2P40123 477 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 RHBDL3P58872 404 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 ANAPC15P60006 121 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
SS18-210ENST00000578700 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 TRIB2Q92519 343 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 XAGE2Q96GT9 111 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 NUDT12Q9BQG2 462 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 PAG1Q9NWQ8 432 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 RAI14Q9P0K7 980 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.1□□□□□ -0.47
SS18-210ENST00000578700 EYSQ5T1H1 3165 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 VCANP13611 3396 aa12.1□□□□□ -0.47
SS18-210ENST00000578700 ST18O60284 1047 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 LDHCP07864 332 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 UQCRFS1P1P0C7P4 283 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 PRKAR2AP13861 404 aaKnown RBP12.09□□□□□ -0.47
SS18-210ENST00000578700 MDM2Q00987 491 aaPredicted RBP12.09□□□□□ -0.47
SS18-210ENST00000578700 RRP1BQ14684 758 aaKnown RBP12.09□□□□□ -0.47
SS18-210ENST00000578700 LRIT3Q3SXY7 679 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 GPR153Q6NV75 609 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 TEX11Q8IYF3 940 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 P2RX7Q99572 595 aaKnown RBP12.09□□□□□ -0.47
SS18-210ENST00000578700 AS3MTQ9HBK9 375 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
SS18-210ENST00000578700 MTMR10Q9NXD2 777 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 TMOD4Q9NZQ9 345 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 OGDHLQ9ULD0 1010 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 STXBP5LQ9Y2K9 1186 aa12.09□□□□□ -0.47
SS18-210ENST00000578700 PRUNE2Q8WUY3 3088 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 GOLIM4O00461 696 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 ZBTB22O15209 634 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 HSP90AA1P07900 732 aaKnown RBP12.08□□□□□ -0.48
SS18-210ENST00000578700 GSTO1P78417 241 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 MTMR2Q13614 643 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 TTF1Q15361 905 aaPredicted RBP12.08□□□□□ -0.48
SS18-210ENST00000578700 ZSCAN25Q6NSZ9 544 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 KBTBD3Q8NAB2 608 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 GPRC5AQ8NFJ5 357 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 SNX21Q969T3 373 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 ZNF512BQ96KM6 892 aaPredicted RBP12.08□□□□□ -0.48
SS18-210ENST00000578700 FAM161BQ96MY7 647 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 PAGR1Q9BTK6 254 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 PLXNB2O15031 1838 aa12.08□□□□□ -0.48
SS18-210ENST00000578700 DDX60LQ5H9U9 1706 aaKnown RBP12.08□□□□□ -0.48
SS18-210ENST00000578700 ZFYP08048 801 aaPredicted RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 ZKSCAN1P17029 563 aaPredicted RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 CCND3P30281 292 aaPredicted RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 CACNB2Q08289 660 aaPredicted RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 NMIQ13287 307 aaPredicted RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 Q3C1V9 767 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 PI16Q6UXB8 463 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 ZNF384Q8TF68 577 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 NSUN4Q96CB9 384 aaKnown RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 NOL10Q9BSC4 688 aaKnown RBP12.07□□□□□ -0.48
SS18-210ENST00000578700 TRIM34Q9BYJ4 488 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 TBC1D2Q9BYX2 928 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.07□□□□□ -0.48
SS18-210ENST00000578700 TXNRD2Q9NNW7 524 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 HMG20BQ9P0W2 317 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 LRP2BPQ9P2M1 347 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 PFASO15067 1338 aa12.07□□□□□ -0.48
SS18-210ENST00000578700 GDF11O95390 407 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 SLC4A3P48751 1232 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 BACE1P56817 501 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 CCL14Q16627 93 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 LRRC26Q2I0M4 334 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 RNF20Q5VTR2 975 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 SPATA5Q8NB90 893 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 SH3RF3Q8TEJ3 882 aaPredicted RBP12.06□□□□□ -0.48
SS18-210ENST00000578700 PI4KBQ9UBF8 816 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 MORF4L1Q9UBU8 362 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 NDUFB9Q9Y6M9 179 aa12.06□□□□□ -0.48
SS18-210ENST00000578700 MCM2P49736 904 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 HERVK_113P62684 666 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 JAG1P78504 1218 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 SHROOM1Q2M3G4 852 aaPredicted RBP12.05□□□□□ -0.48
SS18-210ENST00000578700 WDR78Q5VTH9 848 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 MAPKAPK5Q8IW41 473 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 CRACR2BQ8N4Y2 399 aaPredicted RBP12.05□□□□□ -0.48
SS18-210ENST00000578700 TGFBRAP1Q8WUH2 860 aa12.05□□□□□ -0.48
SS18-210ENST00000578700 SOCS4Q8WXH5 440 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms