RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ROBO3Q96MS0 1386 aa24.5■■□□□ 1.51
VPS53-210ENST00000571456 PHF20L1A8MW92 1017 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 GJA8P48165 433 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 GABPAQ06546 454 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 TATDN1Q6P1N9 297 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.49■■□□□ 1.51
VPS53-210ENST00000571456 KIAA1211Q6ZU35 1233 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 TBC1D2Q9BYX2 928 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 DOCK1Q14185 1865 aa24.49■■□□□ 1.51
VPS53-210ENST00000571456 PLCD1P51178 756 aa24.48■■□□□ 1.51
VPS53-210ENST00000571456 ESYT1Q9BSJ8 1104 aa24.48■■□□□ 1.51
VPS53-210ENST00000571456 GJB1P08034 283 aa24.47■■□□□ 1.51
VPS53-210ENST00000571456 PCP11498 1178 aaKnown RBP24.47■■□□□ 1.51
VPS53-210ENST00000571456 VPS53Q5VIR6 699 aa24.47■■□□□ 1.51
VPS53-210ENST00000571456 C16orf86Q6ZW13 317 aa24.47■■□□□ 1.51
VPS53-210ENST00000571456 SCYL3Q8IZE3 742 aa24.47■■□□□ 1.51
VPS53-210ENST00000571456 ANAPC4Q9UJX5 808 aa24.47■■□□□ 1.51
VPS53-210ENST00000571456 FOXP2O15409 715 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 FGAP02671 866 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 ASNSP08243 561 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 PDE4BQ07343 736 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 VGLL4Q14135 290 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 CCDC17Q96LX7 622 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 ATAD5Q96QE3 1844 aa24.46■■□□□ 1.51
VPS53-210ENST00000571456 LAMA4Q16363 1823 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 MINDY4BA8MYZ0 360 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 CAP2P40123 477 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 PPARAQ07869 468 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 ERO1BQ86YB8 467 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 DNAJC18Q9H819 358 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 ZCCHC17Q9NP64 241 aaKnown RBP24.45■■□□□ 1.5
VPS53-210ENST00000571456 PICK1Q9NRD5 415 aa24.45■■□□□ 1.5
VPS53-210ENST00000571456 CCL5P13501 91 aa24.44■■□□□ 1.5
VPS53-210ENST00000571456 SRRDQ9UH36 339 aa24.44■■□□□ 1.5
VPS53-210ENST00000571456 U3KPZ7 1027 aaPredicted RBP24.44■■□□□ 1.5
VPS53-210ENST00000571456 SPDYE5A6NIY4 337 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 EPB41L2O43491 1005 aaKnown RBP24.43■■□□□ 1.5
VPS53-210ENST00000571456 CETPP11597 493 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 INPP5BP32019 993 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 GRK4P32298 578 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 PPATQ06203 517 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 CERKLQ49MI3 558 aaPredicted RBP24.43■■□□□ 1.5
VPS53-210ENST00000571456 RNF208Q9H0X6 261 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 CABP5Q9NP86 173 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 SNCAIPQ9Y6H5 919 aa24.43■■□□□ 1.5
VPS53-210ENST00000571456 FARP2O94887 1054 aaPredicted RBP24.42■■□□□ 1.5
VPS53-210ENST00000571456 CYP2D6P10635 497 aa24.42■■□□□ 1.5
VPS53-210ENST00000571456 SHMT1P34896 483 aa24.42■■□□□ 1.5
VPS53-210ENST00000571456 CDK8P49336 464 aa24.42■■□□□ 1.5
VPS53-210ENST00000571456 IMMTQ16891 758 aaKnown RBP24.42■■□□□ 1.5
VPS53-210ENST00000571456 RAET1EQ8TD07 263 aa24.42■■□□□ 1.5
VPS53-210ENST00000571456 ZKSCAN4Q969J2 545 aaPredicted RBP24.42■■□□□ 1.5
VPS53-210ENST00000571456 RNF41Q9H4P4 317 aaPredicted RBP24.42■■□□□ 1.5
VPS53-210ENST00000571456 BTBD19C9JJ37 291 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 ZNF213O14771 459 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 EVI5O60447 810 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 ECM2O94769 699 aaPredicted RBP24.41■■□□□ 1.5
VPS53-210ENST00000571456 REC8O95072 547 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 HOXD10P28358 340 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 GPR153Q6NV75 609 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 MAP4K1Q92918 833 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 IL25Q9H293 177 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 MKNK2Q9HBH9 465 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 AS3MTQ9HBK9 375 aa24.41■■□□□ 1.5
VPS53-210ENST00000571456 CYP2D7A0A087X1C5 515 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 FAM196BA6NMK8 535 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 PSMC4P43686 418 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 PPIL2Q13356 520 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 ABCB5Q2M3G0 1257 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 TRIM47Q96LD4 638 aa24.4■■□□□ 1.5
VPS53-210ENST00000571456 FGRP09769 529 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 CTGFP29279 349 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 PPP4R3BQ5MIZ7 849 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 TMEM179Q6ZVK1 233 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 ZNF444Q8N0Y2 327 aaPredicted RBP24.39■■□□□ 1.49
VPS53-210ENST00000571456 DEFB123Q8N688 67 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 U2AF1L4Q8WU68 220 aaKnown RBP24.39■■□□□ 1.49
VPS53-210ENST00000571456 DYNLL2Q96FJ2 89 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 BIN2Q9UBW5 565 aaPredicted RBP24.39■■□□□ 1.49
VPS53-210ENST00000571456 ZBTB21Q9ULJ3 1066 aa24.39■■□□□ 1.49
VPS53-210ENST00000571456 USP17L5A8MUK1 530 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 ORC4O43929 436 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 PTPRAP18433 802 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 OSBPP22059 807 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 UBXN2AP68543 259 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 C17orf99Q6UX52 265 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 ANO2Q9NQ90 1003 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 STXBP5LQ9Y2K9 1186 aa24.38■■□□□ 1.49
VPS53-210ENST00000571456 CXCL11O14625 94 aa24.37■■□□□ 1.49
VPS53-210ENST00000571456 SNAPC2Q13487 334 aa24.37■■□□□ 1.49
VPS53-210ENST00000571456 LSG1Q9H089 658 aaKnown RBP24.37■■□□□ 1.49
VPS53-210ENST00000571456 PHIPQ8WWQ0 1821 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 FMNL1O95466 1100 aaPredicted RBP24.36■■□□□ 1.49
VPS53-210ENST00000571456 AKNAD1Q5T1N1 836 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 RNF20Q5VTR2 975 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 MFSD6Q6ZSS7 791 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 STAG1Q8WVM7 1258 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 WDR18Q9BV38 432 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 COL25A1Q9BXS0 654 aaPredicted RBP24.36■■□□□ 1.49
VPS53-210ENST00000571456 CNNM2Q9H8M5 875 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms