RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RGMBQ6NW40 437 aa11□□□□□ -0.65
VPS35-211ENST00000569950 TMEM179Q6ZVK1 233 aa11□□□□□ -0.65
VPS35-211ENST00000569950 RASGRP2Q7LDG7 609 aa11□□□□□ -0.65
VPS35-211ENST00000569950 ERO1BQ86YB8 467 aa11□□□□□ -0.65
VPS35-211ENST00000569950 AMOTL1Q8IY63 956 aa11□□□□□ -0.65
VPS35-211ENST00000569950 CEP95Q96GE4 821 aa11□□□□□ -0.65
VPS35-211ENST00000569950 WDR18Q9BV38 432 aa11□□□□□ -0.65
VPS35-211ENST00000569950 GINM1Q9NU53 330 aa11□□□□□ -0.65
VPS35-211ENST00000569950 MTMR4Q9NYA4 1195 aa11□□□□□ -0.65
VPS35-211ENST00000569950 A0A0G2JMZ2 1700 aa11□□□□□ -0.65
VPS35-211ENST00000569950 RANBP6O60518 1105 aaKnown RBP10.99□□□□□ -0.65
VPS35-211ENST00000569950 PPATQ06203 517 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 CYP4F22Q6NT55 531 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 ENAHQ8N8S7 591 aaPredicted RBP10.99□□□□□ -0.65
VPS35-211ENST00000569950 IGDCC4Q8TDY8 1250 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 ANKS1AQ92625 1134 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 MKL1Q969V6 931 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 OPTNQ96CV9 577 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 ZKSCAN3Q9BRR0 538 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 RNF41Q9H4P4 317 aaPredicted RBP10.99□□□□□ -0.65
VPS35-211ENST00000569950 MKNK2Q9HBH9 465 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 ZHX2Q9Y6X8 837 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 SMCHD1A6NHR9 2005 aa10.99□□□□□ -0.65
VPS35-211ENST00000569950 A0A0G2JLL6 359 aaPredicted RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 TESPA1A2RU30 521 aaPredicted RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 USP17L5A8MUK1 530 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 AOC2O75106 756 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 SLC3A2P08195 630 aaKnown RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 EEF2P13639 858 aaKnown RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 VEGFBP49765 207 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 SPP2Q13103 211 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 SH3D19Q5HYK7 790 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 RRP12Q5JTH9 1297 aaKnown RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 GPAT2Q6NUI2 795 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 POTEEQ6S8J3 1075 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 CHST3Q7LGC8 479 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 PRRT2Q7Z6L0 340 aaPredicted RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 ZNF444Q8N0Y2 327 aaPredicted RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 BRI3BPQ8WY22 251 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 SLC10A4Q96EP9 437 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 OTUD5Q96G74 571 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 TCEANC2Q96MN5 208 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 TBC1D32Q96NH3 1257 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 PTPN18Q99952 460 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 AGXT2Q9BYV1 514 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 KRT23Q9C075 422 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 CNNM2Q9H8M5 875 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 ZSWIM6Q9HCJ5 1215 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 EMILIN3Q9NT22 766 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 NYAP2Q9P242 653 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 ABT1Q9ULW3 272 aaKnown RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 TMX2Q9Y320 296 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 CSADQ9Y600 493 aa10.98□□□□□ -0.65
VPS35-211ENST00000569950 COL11A1P12107 1806 aaPredicted RBP10.98□□□□□ -0.65
VPS35-211ENST00000569950 MPHOSPH10O00566 681 aaKnown RBP10.97□□□□□ -0.65
VPS35-211ENST00000569950 TSPY3P0CV98 308 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 TSPY8P0CW00 308 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 ZBTB48P10074 688 aaPredicted RBP10.97□□□□□ -0.65
VPS35-211ENST00000569950 ZNF157P51786 506 aaPredicted RBP10.97□□□□□ -0.65
VPS35-211ENST00000569950 ANAPC15P60006 121 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 ICA1Q05084 483 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 RAB3GAP1Q15042 981 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 DEFB115Q30KQ5 88 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 ZNF280CQ8ND82 737 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 NCOA7Q8NI08 942 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 ESR2Q92731 530 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 CAPNS2Q96L46 248 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 C12orf42Q96LP6 360 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 JAKMIP1Q96N16 626 aaKnown RBP10.97□□□□□ -0.65
VPS35-211ENST00000569950 TTC14Q96N46 770 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 NEK1Q96PY6 1258 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 TRIM34Q9BYJ4 488 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 TM6SF1Q9BZW5 370 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 KIAA1683Q9H0B3 1180 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 KANSL2Q9H9L4 492 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 LY9Q9HBG7 655 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 ZNF287Q9HBT7 754 aa10.97□□□□□ -0.65
VPS35-211ENST00000569950 BAZ2BQ9UIF8 2168 aaKnown RBP10.97□□□□□ -0.65
VPS35-211ENST00000569950 TNKSO95271 1327 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 WDR19Q8NEZ3 1342 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 TSPY2A6NKD2 308 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 IGF2BP3O00425 579 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS35-211ENST00000569950 SH2B2O14492 632 aaPredicted RBP10.96□□□□□ -0.65
VPS35-211ENST00000569950 CXCL11O14625 94 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 PRC1O43663 620 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 NT5C2P49902 561 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 BACE1P56817 501 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 MKRN3Q13064 507 aaKnown RBP10.96□□□□□ -0.65
VPS35-211ENST00000569950 MTMR2Q13614 643 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 SLC35G1Q2M3R5 365 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 RNF20Q5VTR2 975 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 FBXL16Q8N461 479 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 ZSCAN10Q96SZ4 725 aaPredicted RBP10.96□□□□□ -0.65
VPS35-211ENST00000569950 TMEM47Q9BQJ4 181 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 LRRC2Q9BYS8 371 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 C22orf23Q9BZE7 217 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 CABP5Q9NP86 173 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 PICK1Q9NRD5 415 aa10.96□□□□□ -0.65
VPS35-211ENST00000569950 WDR33Q9C0J8 1336 aaKnown RBP10.95□□□□□ -0.66
VPS35-211ENST00000569950 TRIM75PA6NK02 468 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms