RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 IGF2BP3O00425 579 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLK3-208ENST00000562626 ZNF213O14771 459 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 SLC27A2O14975 620 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 ORC4O43929 436 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 ASNSP08243 561 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 ZBTB48P10074 688 aaPredicted RBP11.62□□□□□ -0.55
CLK3-208ENST00000562626 SPP2Q13103 211 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 RRP12Q5JTH9 1297 aaKnown RBP11.62□□□□□ -0.55
CLK3-208ENST00000562626 CREB3L3Q68CJ9 461 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 MKNK2Q9HBH9 465 aa11.62□□□□□ -0.55
CLK3-208ENST00000562626 U3KPZ7 1027 aaPredicted RBP11.62□□□□□ -0.55
CLK3-208ENST00000562626 PLXNB2O15031 1838 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 A0A0G2JLL6 359 aaPredicted RBP11.61□□□□□ -0.55
CLK3-208ENST00000562626 TESPA1A2RU30 521 aaPredicted RBP11.61□□□□□ -0.55
CLK3-208ENST00000562626 CCDC85CA6NKD9 419 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 USP17L5A8MUK1 530 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 E7EWF7 191 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 FOXN1O15353 648 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 EEF2P13639 858 aaKnown RBP11.61□□□□□ -0.55
CLK3-208ENST00000562626 TFAP4Q01664 338 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 PDE4BQ07343 736 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 NOGQ13253 232 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 MTMR2Q13614 643 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 IMMTQ16891 758 aaKnown RBP11.61□□□□□ -0.55
CLK3-208ENST00000562626 GPAT2Q6NUI2 795 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 KIAA1211Q6ZU35 1233 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 TMEM179Q6ZVK1 233 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 CYB5R4Q7L1T6 521 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 RASGRP2Q7LDG7 609 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 PRRT2Q7Z6L0 340 aaPredicted RBP11.61□□□□□ -0.55
CLK3-208ENST00000562626 FAM43AQ8N2R8 423 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 ZNF280CQ8ND82 737 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 NEDD1Q8NHV4 660 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 CEP95Q96GE4 821 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 ZKSCAN3Q9BRR0 538 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 WDR18Q9BV38 432 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 R3HDMLQ9H3Y0 253 aa11.61□□□□□ -0.55
CLK3-208ENST00000562626 CCL15-CCL14A0A0B4J2E2 113 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 RANBP6O60518 1105 aaKnown RBP11.6□□□□□ -0.55
CLK3-208ENST00000562626 KDM4AO75164 1064 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 HMGCS2P54868 508 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 ANTXR2P58335 489 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 ZYXQ15942 572 aaKnown RBP11.6□□□□□ -0.55
CLK3-208ENST00000562626 CCL15Q16663 113 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 ADCK5Q3MIX3 580 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 TREML2Q5T2D2 321 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 RCSD1Q6JBY9 416 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 CASC1Q6TDU7 716 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 MFSD6Q6ZSS7 791 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 CCDC17Q96LX7 622 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 USP26Q9BXU7 913 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 TOMM22Q9NS69 142 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 EMILIN3Q9NT22 766 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 CTNNA3Q9UI47 895 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 TAOK2Q9UL54 1235 aa11.6□□□□□ -0.55
CLK3-208ENST00000562626 LCTP09848 1927 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 BTBD19C9JJ37 291 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 SLC3A2P08195 630 aaKnown RBP11.59□□□□□ -0.55
CLK3-208ENST00000562626 TSPY3P0CV98 308 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 TSPY8P0CW00 308 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 MAP2K2P36507 400 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 TM4SF4P48230 202 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 ICA1Q05084 483 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 CHST3Q7LGC8 479 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 IFNL1Q8IU54 200 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 ZNF444Q8N0Y2 327 aaPredicted RBP11.59□□□□□ -0.55
CLK3-208ENST00000562626 KCNB2Q92953 911 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 SENP2Q9HC62 589 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 CABP5Q9NP86 173 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 GINM1Q9NU53 330 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 TSKSQ9UJT2 592 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 PLXNA1Q9UIW2 1896 aa11.59□□□□□ -0.55
CLK3-208ENST00000562626 MANSC4A6NHS7 340 aaPredicted RBP11.58□□□□□ -0.56
CLK3-208ENST00000562626 TSPY2A6NKD2 308 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 CXCL11O14625 94 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 CPA1P15085 419 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 HSPA4P34932 840 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 NOVP48745 357 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 GTF2A2P52657 109 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 BACE1P56817 501 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 ATP2B2Q01814 1243 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 SNAPC2Q13487 334 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 SH3D19Q5HYK7 790 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 POTEEQ6S8J3 1075 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 GADL1Q6ZQY3 521 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 MB21D2Q8IYB1 491 aaPredicted RBP11.58□□□□□ -0.56
CLK3-208ENST00000562626 LRRC47Q8N1G4 583 aaKnown RBP11.58□□□□□ -0.56
CLK3-208ENST00000562626 CHMP4CQ96CF2 233 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 GPHNQ9NQX3 736 aaPredicted RBP11.58□□□□□ -0.56
CLK3-208ENST00000562626 MTMR4Q9NYA4 1195 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 ZSWIM5Q9P217 1185 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 SNX14Q9Y5W7 946 aa11.58□□□□□ -0.56
CLK3-208ENST00000562626 RBBP6Q7Z6E9 1792 aaKnown RBP11.58□□□□□ -0.56
CLK3-208ENST00000562626 USP17L10C9JJH3 530 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 PEX10O60683 326 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 CTCFP49711 727 aaPredicted RBP11.57□□□□□ -0.56
CLK3-208ENST00000562626 SPICE1Q8N0Z3 855 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 NUP88Q99567 741 aaPredicted RBP11.57□□□□□ -0.56
CLK3-208ENST00000562626 KIAA1683Q9H0B3 1180 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 RNF41Q9H4P4 317 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms