RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZNF512BQ96KM6 892 aaPredicted RBP12.88□□□□□ -0.35
CUX1-218ENST00000560541 ARGLU1Q9NWB6 273 aaPredicted RBP12.88□□□□□ -0.35
CUX1-218ENST00000560541 TEX33O43247 280 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 PDE8AO60658 829 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 PRDM1O75626 825 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 TBX2Q13207 712 aaPredicted RBP12.88□□□□□ -0.35
CUX1-218ENST00000560541 SDR42E1Q8WUS8 393 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 EPSTI1Q96J88 318 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 LZTFL1Q9NQ48 299 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 VPS54Q9P1Q0 977 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 PLEKHG2Q9H7P9 1386 aa12.88□□□□□ -0.35
CUX1-218ENST00000560541 ERICH2A1L162 156 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 SOWAHDA6NJG2 315 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 TUBB4AP04350 444 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 ZNF18P17022 549 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 RILPL1Q5EBL4 403 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 WASF1Q92558 559 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 STAMQ92783 540 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 CCDC34Q96HJ3 373 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 STK36Q9NRP7 1315 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 MORC3Q14149 939 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 CRACR2BQ8N4Y2 399 aaPredicted RBP12.87□□□□□ -0.35
CUX1-218ENST00000560541 TEX13AQ9BXU3 409 aaPredicted RBP12.87□□□□□ -0.35
CUX1-218ENST00000560541 MRPL44Q9H9J2 332 aaKnown RBP12.87□□□□□ -0.35
CUX1-218ENST00000560541 RAI14Q9P0K7 980 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 A0A087X0B3 334 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 EFCAB8A8MWE9 144 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 ACTN4O43707 911 aaKnown RBP12.87□□□□□ -0.35
CUX1-218ENST00000560541 PPP2R3AQ06190 1150 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 EARS2Q5JPH6 523 aaKnown RBP12.87□□□□□ -0.35
CUX1-218ENST00000560541 ZNF654Q8IZM8 581 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 TXLNBQ8N3L3 684 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 MPHOSPH8Q99549 860 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 KRT23Q9C075 422 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 CNNM2Q9H8M5 875 aa12.87□□□□□ -0.35
CUX1-218ENST00000560541 ZRANB2O95218 330 aaKnown RBP eCLIP12.86□□□□□ -0.35
CUX1-218ENST00000560541 SLC5A1P13866 664 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 MLKLQ8NB16 471 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 ENOX1Q8TC92 643 aaKnown RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 CCDC12Q8WUD4 166 aaPredicted RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 SHISA4Q96DD7 197 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 LRP2BPQ9P2M1 347 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 PAPPAQ13219 1627 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 WNT7AO00755 349 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 STX10O60499 249 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 SASH3O75995 380 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 DEXIO95424 95 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 FGFR2P21802 821 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 SARSP49591 514 aaKnown RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 HSPA2P54652 639 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 ALX1Q15699 326 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 NUTM2AQ8IVF1 878 aaPredicted RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 FANCBQ8NB91 859 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 UBAC1Q9BSL1 405 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 NACAP1Q9BZK3 213 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 FOXP1Q9H334 677 aaPredicted RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 ABCF2Q9UG63 623 aa12.86□□□□□ -0.35
CUX1-218ENST00000560541 BAZ2BQ9UIF8 2168 aaKnown RBP12.86□□□□□ -0.35
CUX1-218ENST00000560541 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
CUX1-218ENST00000560541 CD44P16070 742 aaKnown RBP12.85□□□□□ -0.35
CUX1-218ENST00000560541 NOM1Q5C9Z4 860 aaKnown RBP12.85□□□□□ -0.35
CUX1-218ENST00000560541 LRCH2Q5VUJ6 765 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 CREBRFQ8IUR6 639 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 SRRTQ9BXP5 876 aaKnown RBP12.85□□□□□ -0.35
CUX1-218ENST00000560541 STRCP1A6NGW2 1772 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 CCDC91Q7Z6B0 441 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 ADGRA1Q86SQ6 560 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 SRLQ86TD4 932 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 FCHSD1Q86WN1 690 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 DACH1Q9UI36 760 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 SRPRBQ9Y5M8 271 aaKnown RBP12.85□□□□□ -0.35
CUX1-218ENST00000560541 CYP2D7A0A087X1C5 515 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 MAP3K9P80192 1104 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 KIFC2Q96AC6 838 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 MRFAP1Q9Y605 127 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 TOGARAM1Q9Y4F4 1720 aa12.85□□□□□ -0.35
CUX1-218ENST00000560541 TFRCP02786 760 aaKnown RBP12.84□□□□□ -0.35
CUX1-218ENST00000560541 PLCD1P51178 756 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 RBL2Q08999 1139 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 NR1I3Q14994 352 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 NT5DC1Q5TFE4 455 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 STAG1Q8WVM7 1258 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 TNKSO95271 1327 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 MROH5Q6ZUA9 1318 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 WTIPA6NIX2 430 aaPredicted RBP12.84□□□□□ -0.35
CUX1-218ENST00000560541 MYO1BO43795 1136 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 AKAP17AQ02040 695 aaKnown RBP12.84□□□□□ -0.35
CUX1-218ENST00000560541 IGSF22Q8N9C0 903 aa12.84□□□□□ -0.35
CUX1-218ENST00000560541 PRPF38AQ8NAV1 312 aaKnown RBP12.84□□□□□ -0.35
CUX1-218ENST00000560541 PPARAQ07869 468 aa12.83□□□□□ -0.35
CUX1-218ENST00000560541 MUM1L1Q5H9M0 696 aa12.83□□□□□ -0.35
CUX1-218ENST00000560541 RAD9BQ6WBX8 426 aa12.83□□□□□ -0.35
CUX1-218ENST00000560541 SYMPKQ92797 1274 aaKnown RBP12.83□□□□□ -0.35
CUX1-218ENST00000560541 PUF60Q9UHX1 559 aaKnown RBP12.83□□□□□ -0.35
CUX1-218ENST00000560541 DCCP43146 1447 aa12.83□□□□□ -0.36
CUX1-218ENST00000560541 CCDC189A1A4V9 331 aa12.83□□□□□ -0.36
CUX1-218ENST00000560541 TRIM75PA6NK02 468 aa12.83□□□□□ -0.36
CUX1-218ENST00000560541 AKR1B15C9JRZ8 316 aaPredicted RBP12.83□□□□□ -0.36
CUX1-218ENST00000560541 PLEKHA8P1O95397 391 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms