RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TATDN1Q6P1N9 297 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 C12orf42Q96LP6 360 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 GDF15Q99988 308 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 NUDT12Q9BQG2 462 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 NBPF3Q9H094 633 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 EHD4Q9H223 541 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 PORCNQ9H237 461 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 STAP2Q9UGK3 403 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 LAMA3Q16787 3333 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 GH2P01242 217 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 BMP8BP34820 402 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 Q3C1V9 767 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 HSP90AB4PQ58FF6 505 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 MORN1Q5T089 497 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 USP17L2Q6R6M4 530 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 CERS3Q8IU89 383 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 C7orf61Q8IZ16 206 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 CCDC8Q9H0W5 538 aaPredicted RBP16.92■□□□□ 0.3
LDLR-213ENST00000560502 TSHZ2Q9NRE2 1034 aa16.92■□□□□ 0.3
LDLR-213ENST00000560502 IDH1O75874 414 aaKnown RBP16.91■□□□□ 0.3
LDLR-213ENST00000560502 TMED8Q6PL24 325 aaPredicted RBP16.91■□□□□ 0.3
LDLR-213ENST00000560502 GPR142Q7Z601 462 aa16.91■□□□□ 0.3
LDLR-213ENST00000560502 TRMT44Q8IYL2 757 aaKnown RBP16.91■□□□□ 0.3
LDLR-213ENST00000560502 MIGA1Q8NAN2 632 aa16.91■□□□□ 0.3
LDLR-213ENST00000560502 C11orf49Q9H6J7 331 aa16.91■□□□□ 0.3
LDLR-213ENST00000560502 PFASO15067 1338 aa16.91■□□□□ 0.3
LDLR-213ENST00000560502 RAB11FIP3O75154 756 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 CNMDO75829 334 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 ZKSCAN1P17029 563 aaPredicted RBP16.9■□□□□ 0.3
LDLR-213ENST00000560502 CACNB2Q08289 660 aaPredicted RBP16.9■□□□□ 0.3
LDLR-213ENST00000560502 ANKRD45Q5TZF3 282 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 PLEKHH3Q7Z736 793 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 MAGEB6Q8N7X4 407 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 LRCH3Q96II8 777 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 PAGR1Q9BTK6 254 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 ANTXR1Q9H6X2 564 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 SERPINB13Q9UIV8 391 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 ZMYND8Q9ULU4 1186 aaPredicted RBP16.9■□□□□ 0.3
LDLR-213ENST00000560502 NDUFB9Q9Y6M9 179 aa16.9■□□□□ 0.3
LDLR-213ENST00000560502 COL6A1P12109 1028 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 RGS2P41220 211 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 CCL14Q16627 93 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 APBA2Q99767 749 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 KIAA1683Q9H0B3 1180 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 RABGAP1Q9Y3P9 1069 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 RLFQ13129 1914 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 A0A0G2JMZ2 1700 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 ZNF236Q9UL36 1845 aa16.89■□□□□ 0.29
LDLR-213ENST00000560502 USP17L15C9J2P7 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L13C9JLJ4 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L11C9JVI0 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L18D6R9N7 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L22D6RA61 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L17D6RBQ6 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L19D6RCP7 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L20D6RJB6 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 CCND3P30281 292 aaPredicted RBP16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP5P45974 858 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 USP17L24Q0WX57 530 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 LHX8Q68G74 356 aa16.88■□□□□ 0.29
LDLR-213ENST00000560502 RIOK1Q9BRS2 568 aaKnown RBP16.88■□□□□ 0.29
LDLR-213ENST00000560502 VCAM1P19320 739 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 SHMT1P34896 483 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 USP14P54578 494 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 MAP3K12Q12852 859 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 MAP2K5Q13163 448 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 LBX2Q6XYB7 198 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 CATSPERGQ6ZRH7 1159 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 TTC6Q86TZ1 520 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 ACER1Q8TDN7 264 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 FEZ1Q99689 392 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 LNPKQ9C0E8 428 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 MYH8P13535 1937 aa16.87■□□□□ 0.29
LDLR-213ENST00000560502 PDE4AP27815 886 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 GUCY1A2P33402 732 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 MAGEA10P43363 369 aaPredicted RBP16.86■□□□□ 0.29
LDLR-213ENST00000560502 PLCD1P51178 756 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 GABPAQ06546 454 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 ZYXQ15942 572 aaKnown RBP16.86■□□□□ 0.29
LDLR-213ENST00000560502 ABCB5Q2M3G0 1257 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 CERKLQ49MI3 558 aaPredicted RBP16.86■□□□□ 0.29
LDLR-213ENST00000560502 AACSQ86V21 672 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 ERC1Q8IUD2 1116 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 CCAR1Q8IX12 1150 aaKnown RBP16.86■□□□□ 0.29
LDLR-213ENST00000560502 LRRCC1Q9C099 1032 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 EXOC6BQ9Y2D4 811 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 PARP14Q460N5 1801 aa16.86■□□□□ 0.29
LDLR-213ENST00000560502 SYN1P17600 705 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 CCNA1P78396 465 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 RAB3GAP1Q15042 981 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 GPR153Q6NV75 609 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 BACH2Q9BYV9 841 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 BTBD7Q9P203 1132 aa16.85■□□□□ 0.29
LDLR-213ENST00000560502 SLC15A5A6NIM6 579 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 SPDYE16A6NNV3 312 aaPredicted RBP16.84■□□□□ 0.29
LDLR-213ENST00000560502 IGHA2P01877 340 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 HOXC6P09630 235 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 PTPREP23469 700 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 GRB14Q14449 540 aa16.84■□□□□ 0.29
LDLR-213ENST00000560502 LRIT3Q3SXY7 679 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms