RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TSPAN15O95858 294 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 ESR1P03372 595 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 PLCG1P19174 1290 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 DAB2P98082 770 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 CREG2Q8IUH2 290 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 DNAJB8Q8NHS0 232 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 ABHD4Q8TB40 342 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 Q96M66 194 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 TOX2Q96NM4 488 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 DIRC2Q96SL1 478 aa8.51□□□□□ -1.05
VPS13C-208ENST00000559119 DNAJC25-GNG10A0A024R161 153 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 TPP2P29144 1249 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-208ENST00000559119 FBLN7Q53RD9 439 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 RALGPS1Q5JS13 557 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 FBXO15Q8NCQ5 510 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-208ENST00000559119 PHC3Q8NDX5 983 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 FAM13CQ8NE31 585 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 NSUN3Q9H649 340 aaKnown RBP8.5□□□□□ -1.05
VPS13C-208ENST00000559119 TMEM59LQ9UK28 342 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 CORINQ9Y5Q5 1042 aa8.5□□□□□ -1.05
VPS13C-208ENST00000559119 HK2P52789 917 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 YARSP54577 528 aaKnown RBP8.49□□□□□ -1.05
VPS13C-208ENST00000559119 KRTAP19-4Q3LI73 84 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 SPOCD1Q6ZMY3 1216 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 CCDC84Q86UT8 332 aaPredicted RBP8.49□□□□□ -1.05
VPS13C-208ENST00000559119 ANKLE2Q86XL3 938 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 AEBP1Q8IUX7 1158 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 CYB5D2Q8WUJ1 264 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 GPATCH2Q9NW75 528 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 KCNH3Q9ULD8 1083 aa8.49□□□□□ -1.05
VPS13C-208ENST00000559119 WASH4PA8MWX3 477 aa8.48□□□□□ -1.05
VPS13C-208ENST00000559119 NFIBO00712 420 aa8.48□□□□□ -1.05
VPS13C-208ENST00000559119 MYLIPQ8WY64 445 aa8.48□□□□□ -1.05
VPS13C-208ENST00000559119 DUSP15Q9H1R2 295 aaPredicted RBP8.48□□□□□ -1.05
VPS13C-208ENST00000559119 UPK3BL1B0FP48 263 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 UPK3BL2E5RIL1 263 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 BNC2Q6ZN30 1099 aaPredicted RBP8.47□□□□□ -1.05
VPS13C-208ENST00000559119 TMC4Q7Z404 712 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 ZSCAN18Q8TBC5 510 aaPredicted RBP8.47□□□□□ -1.05
VPS13C-208ENST00000559119 FAM161BQ96MY7 647 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 GPR62Q9BZJ7 368 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 ADAMTS10Q9H324 1103 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 DUSP13Q9UII6 198 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 USP31Q70CQ4 1352 aa8.47□□□□□ -1.05
VPS13C-208ENST00000559119 F6X3S4 739 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 CILPO75339 1184 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 CTSHP09668 335 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 TNNI2P48788 182 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 CAMK2GQ13555 558 aaPredicted RBP8.46□□□□□ -1.06
VPS13C-208ENST00000559119 DTWD2Q8NBA8 298 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 PPP1R13LQ8WUF5 828 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 EPB41L4BQ9H329 900 aa8.46□□□□□ -1.06
VPS13C-208ENST00000559119 DCP1AQ9NPI6 582 aaPredicted RBP8.46□□□□□ -1.06
VPS13C-208ENST00000559119 PF4P02776 101 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 CFPP27918 469 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 ERVFC1P60507 584 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 LMNB2Q03252 620 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 EGR3Q06889 387 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 GAB4Q2WGN9 574 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 TMEM201Q5SNT2 666 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 RELL1Q8IUW5 271 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 GATAD2BQ8WXI9 593 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 SYTL4Q96C24 671 aaPredicted RBP8.45□□□□□ -1.06
VPS13C-208ENST00000559119 CRELD1Q96HD1 420 aa8.45□□□□□ -1.06
VPS13C-208ENST00000559119 F13A1P00488 732 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 HPXP02790 462 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 TMEM253P0C7T8 217 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 C1QTNF9P0C862 333 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 LTKP29376 864 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 TSPYL5Q86VY4 417 aaPredicted RBP8.44□□□□□ -1.06
VPS13C-208ENST00000559119 CILP2Q8IUL8 1156 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 LRRC56Q8IYG6 542 aaPredicted RBP8.44□□□□□ -1.06
VPS13C-208ENST00000559119 RNF141Q8WVD5 230 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 KRTAP4-7Q9BYR0 210 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 MRS2Q9HD23 443 aa8.44□□□□□ -1.06
VPS13C-208ENST00000559119 FAM221AA4D161 298 aa8.43□□□□□ -1.06
VPS13C-208ENST00000559119 SORBS3O60504 671 aa8.43□□□□□ -1.06
VPS13C-208ENST00000559119 SRFP11831 508 aa8.43□□□□□ -1.06
VPS13C-208ENST00000559119 GBP2P32456 591 aaPredicted RBP8.43□□□□□ -1.06
VPS13C-208ENST00000559119 SLFN12Q8IYM2 578 aa8.43□□□□□ -1.06
VPS13C-208ENST00000559119 KLHL3Q9UH77 587 aa8.43□□□□□ -1.06
VPS13C-208ENST00000559119 PWP1Q13610 501 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 DNAJC14Q6Y2X3 702 aaPredicted RBP8.42□□□□□ -1.06
VPS13C-208ENST00000559119 OXR1Q8N573 874 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 PDZD8Q8NEN9 1154 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 DHX38Q92620 1227 aaKnown RBP8.42□□□□□ -1.06
VPS13C-208ENST00000559119 TMEM74Q96NL1 305 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 REV1Q9UBZ9 1251 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 VTI1BQ9UEU0 232 aa8.42□□□□□ -1.06
VPS13C-208ENST00000559119 LRRN2O75325 713 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 PDIA4P13667 645 aaKnown RBP8.41□□□□□ -1.06
VPS13C-208ENST00000559119 ITGAEP38570 1179 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 CHMP4BP1P59074 171 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 SNAP47Q5SQN1 464 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 CCDC74BQ96LY2 380 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 KCNK12Q9HB15 430 aa8.41□□□□□ -1.06
VPS13C-208ENST00000559119 PRR36Q9H6K5 1346 aa8.4□□□□□ -1.06
VPS13C-208ENST00000559119 GRIN3BO60391 1043 aa8.4□□□□□ -1.06
VPS13C-208ENST00000559119 KRT1P04264 644 aa8.4□□□□□ -1.06
VPS13C-208ENST00000559119 TRHRP34981 398 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms