RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF438Q7Z4V0 828 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 HOMER1Q86YM7 354 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 CCAR1Q8IX12 1150 aaKnown RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 PI4KAP1Q8N8J0 262 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 LINS1Q8NG48 757 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 EPS8L3Q8TE67 593 aaKnown RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 PMEPA1Q969W9 287 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 METTL22Q9BUU2 404 aaPredicted RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 NT5C1AQ9BXI3 368 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 BCO2Q9BYV7 579 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 CCDC113Q9H0I3 377 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 SUV39H2Q9H5I1 410 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 RAB6BQ9NRW1 208 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 LRRC4BQ9NT99 713 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 C9orf78Q9NZ63 289 aaPredicted RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 ASAP1Q9ULH1 1129 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 TTF2Q9UNY4 1162 aaKnown RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 PKD1L3Q7Z443 1732 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 LOC102724159A0A0B4J2E5 919 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 LOC102724428A0A0B4J2F2 783 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 ERVV-1B6SEH8 477 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 TPD52L2O43399 206 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 GADD45BO75293 160 aaPredicted RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 ADH1CP00326 375 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 UBTFL1P0CB47 393 aaPredicted RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 MYL6BP14649 208 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 EIF4A3P38919 411 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 SIK1P57059 783 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 AIMP1Q12904 312 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 PWP2Q15269 919 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 HSP90AB4PQ58FF6 505 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 BEND3Q5T5X7 828 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 RC3H1Q5TC82 1133 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 THSD4Q6ZMP0 1018 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 G2E3Q7L622 706 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 GALNT12Q8IXK2 581 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 C16orf71Q8IYS4 520 aaPredicted RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 TRPM4Q8TD43 1214 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 XAGE3Q8WTP9 111 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 CPLX3Q8WVH0 158 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 PHAXQ9H814 394 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 COPRSQ9NQ92 184 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 DDX56Q9NY93 547 aaKnown RBP6.26□□□□□ -1.41
LDLR-209ENST00000558528 EFR3BQ9Y2G0 817 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 MAP3K2Q9Y2U5 619 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 USP3Q9Y6I4 520 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 WNK3Q9BYP7 1800 aa6.26□□□□□ -1.41
LDLR-209ENST00000558528 F6X3S4 739 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ADH1AP07327 375 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 CYP19A1P11511 503 aaPredicted RBP6.25□□□□□ -1.41
LDLR-209ENST00000558528 GRM5P41594 1212 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 CTCFP49711 727 aaPredicted RBP6.25□□□□□ -1.41
LDLR-209ENST00000558528 ARSDP51689 593 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 IFRD2Q12894 506 aaPredicted RBP6.25□□□□□ -1.41
LDLR-209ENST00000558528 TRIM28Q13263 835 aaKnown RBP6.25□□□□□ -1.41
LDLR-209ENST00000558528 SLC27A3Q5K4L6 730 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 NXPE4Q6UWF7 544 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 PI16Q6UXB8 463 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 DNAJC10Q8IXB1 793 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ZNF295-AS1Q8N0V1 137 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ANKRD44Q8N8A2 993 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 CCDC191Q8NCU4 936 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 SMC1BQ8NDV3 1235 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 RHBDD1Q8TEB9 315 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ACSBG1Q96GR2 724 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 TMEM74Q96NL1 305 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 NLRP3Q96P20 1036 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ZFYVE1Q9HBF4 777 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 NPHS2Q9NP85 383 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 KCNQ5Q9NR82 932 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ANKIB1Q9P2G1 1089 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 FAN1Q9Y2M0 1017 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 ADAMTS7Q9UKP4 1686 aa6.25□□□□□ -1.41
LDLR-209ENST00000558528 A0A0C4DFX4 3053 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 PALLDQ8WX93 1383 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 CCDC194A0A1B0GVG4 234 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 FAM205CA6NFA0 338 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 A1BGP04217 495 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 GBP2P32456 591 aaPredicted RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 IRS1P35568 1242 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 ETFBP38117 255 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 RPIAP49247 311 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 ATP8B2P98198 1209 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 TCIRG1Q13488 830 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 CCDC85BQ15834 202 aaPredicted RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 TJAP1Q5JTD0 557 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 SH3PXD2AQ5TCZ1 1133 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 USPL1Q5W0Q7 1092 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 CLEC4GQ6UXB4 293 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 SV2BQ7L1I2 683 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 KIAA0907Q7Z7F0 614 aaPredicted RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 SYNPOQ8N3V7 929 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 PRPF38AQ8NAV1 312 aaKnown RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 RHPN1Q8TCX5 695 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 MORC4Q8TE76 937 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 SH3TC2Q8TF17 1288 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 ZSCAN10Q96SZ4 725 aaPredicted RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 USP44Q9H0E7 712 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 GINM1Q9NU53 330 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 GEMIN8Q9NWZ8 242 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms