RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 IRF6O14896 467 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 EIF5BO60841 1220 aaKnown RBP15.14■□□□□ 0.01
SHMT2-227ENST00000557269 SLC10A3P09131 477 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 EEF2P13639 858 aaKnown RBP15.14■□□□□ 0.01
SHMT2-227ENST00000557269 ZKSCAN1P17029 563 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-227ENST00000557269 ECE1P42892 770 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 PPATQ06203 517 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 DGKZQ13574 1117 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 DEFB115Q30KQ5 88 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 JAKMIP1Q96N16 626 aaKnown RBP15.14■□□□□ 0.01
SHMT2-227ENST00000557269 NEK1Q96PY6 1258 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 ZIC5Q96T25 663 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 GINM1Q9NU53 330 aa15.14■□□□□ 0.01
SHMT2-227ENST00000557269 TRIM75PA6NK02 468 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 MCCP23508 829 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 TRDNQ13061 729 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 SPP2Q13103 211 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 GRM1Q13255 1194 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 PPIL2Q13356 520 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 RCSD1Q6JBY9 416 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 PAXIP1Q6ZW49 1069 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-227ENST00000557269 RALYLQ86SE5 291 aaKnown RBP15.13■□□□□ 0.01
SHMT2-227ENST00000557269 ZNF280CQ8ND82 737 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 WDR18Q9BV38 432 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 KANSL2Q9H9L4 492 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 GPHNQ9NQX3 736 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-227ENST00000557269 TCP11L1Q9NUJ3 509 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 MTMR4Q9NYA4 1195 aa15.13■□□□□ 0.01
SHMT2-227ENST00000557269 NOVP48745 357 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 EXOSC10Q01780 885 aaKnown RBP15.12■□□□□ 0.01
SHMT2-227ENST00000557269 ICA1Q05084 483 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 KRT32Q14532 448 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 KIAA1755Q5JYT7 1200 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 IL17RAQ96F46 866 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 CAPNS2Q96L46 248 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 TCEANC2Q96MN5 208 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 ZSCAN10Q96SZ4 725 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-227ENST00000557269 KIF2CQ99661 725 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 C22orf23Q9BZE7 217 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 SENP2Q9HC62 589 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 CLIP2Q9UDT6 1046 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 KCNH4Q9UQ05 1017 aa15.12■□□□□ 0.01
SHMT2-227ENST00000557269 PRC1O43663 620 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 AOC2O75106 756 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 RBM25P49756 843 aaKnown RBP15.11■□□□□ 0.01
SHMT2-227ENST00000557269 VEGFBP49765 207 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 ATP2B2Q01814 1243 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 MTMR2Q13614 643 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 MOGSQ13724 837 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 SEC23AQ15436 765 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 ENAHQ8N8S7 591 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-227ENST00000557269 IGDCC4Q8TDY8 1250 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 CCDC102AQ96A19 550 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 MS4A4AQ96JQ5 239 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 LRRC2Q9BYS8 371 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 NYAP2Q9P242 653 aa15.11■□□□□ 0.01
SHMT2-227ENST00000557269 ZBTB48P10074 688 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 CASTP20810 708 aaKnown RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 MCM5P33992 734 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 ANAPC15P60006 121 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 ZYXQ15942 572 aaKnown RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 DHX32Q7L7V1 743 aaKnown RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 LRRC47Q8N1G4 583 aaKnown RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 MKL1Q969V6 931 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 UPF3BQ9BZI7 483 aaKnown RBP15.1■□□□□ 0.01
SHMT2-227ENST00000557269 AS3MTQ9HBK9 375 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 ZSWIM6Q9HCJ5 1215 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 EMILIN3Q9NT22 766 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 STX8Q9UNK0 236 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 TMX2Q9Y320 296 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 TNKSO95271 1327 aa15.1■□□□□ 0.01
SHMT2-227ENST00000557269 USP17L10C9JJH3 530 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 CXCL11O14625 94 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 IFIT3O14879 490 aaKnown RBP15.09■□□□□ 0.01
SHMT2-227ENST00000557269 TTLL1O95922 423 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 RPS6KB1P23443 525 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 NT5C2P49902 561 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 HMGCS2P54868 508 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 BACE1P56817 501 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 IQCA1Q86XH1 822 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 ANKS1AQ92625 1134 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 TBC1D32Q96NH3 1257 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 FEZ1Q99689 392 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 TMEM47Q9BQJ4 181 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 UBAC1Q9BSL1 405 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 KIAA1683Q9H0B3 1180 aa15.09■□□□□ 0.01
SHMT2-227ENST00000557269 WDR33Q9C0J8 1336 aaKnown RBP15.09■□□□□ 0.01
SHMT2-227ENST00000557269 A0A0G2JLL6 359 aaPredicted RBP15.08■□□□□ 0
SHMT2-227ENST00000557269 SH2B2O14492 632 aaPredicted RBP15.08■□□□□ 0
SHMT2-227ENST00000557269 PSMA5P28066 241 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 KIF23Q02241 960 aaPredicted RBP15.08■□□□□ 0
SHMT2-227ENST00000557269 SNAPC2Q13487 334 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 TMEM67Q5HYA8 995 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 SH3D19Q5HYK7 790 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 BLOC1S2Q6QNY1 142 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 RUFY3Q7L099 469 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 RASGRP2Q7LDG7 609 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 PRRT2Q7Z6L0 340 aaPredicted RBP15.08■□□□□ 0
SHMT2-227ENST00000557269 DGKHQ86XP1 1220 aa15.08■□□□□ 0
SHMT2-227ENST00000557269 BRI3BPQ8WY22 251 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms