RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 DNAJB2P25686 324 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 ITGB8P26012 769 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 EPHB4P54760 987 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 MVPQ14764 893 aaKnown RBP11.92□□□□□ -0.5
SCFD1-215ENST00000555259 C1orf53Q5VUE5 145 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 ANO1Q5XXA6 986 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L2Q6R6M4 530 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 PI16Q6UXB8 463 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 IVNS1ABPQ9Y6Y0 642 aa11.92□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L15C9J2P7 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L13C9JLJ4 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L11C9JVI0 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L18D6R9N7 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L22D6RA61 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L17D6RBQ6 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L19D6RCP7 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L20D6RJB6 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 MYCNP04198 464 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-215ENST00000555259 UBTFL1P0CB47 393 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-215ENST00000555259 ADCYAP1R1P41586 468 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 USP17L24Q0WX57 530 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 FOXP4Q8IVH2 680 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-215ENST00000555259 CRACR2BQ8N4Y2 399 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-215ENST00000555259 ATXN2LQ8WWM7 1075 aaKnown RBP11.91□□□□□ -0.5
SCFD1-215ENST00000555259 C12orf42Q96LP6 360 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 ZNF576Q9H609 170 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 COPRSQ9NQ92 184 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 RAI14Q9P0K7 980 aa11.91□□□□□ -0.5
SCFD1-215ENST00000555259 SEPT4O43236 478 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 TLE2Q04725 743 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 MAP3K12Q12852 859 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 SPATA5Q8NB90 893 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 FERMT2Q96AC1 680 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 TRIM34Q9BYJ4 488 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 BTBD7Q9P203 1132 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 TACC3Q9Y6A5 838 aa11.9□□□□□ -0.5
SCFD1-215ENST00000555259 FLT1P17948 1338 aa11.9□□□□□ -0.51
SCFD1-215ENST00000555259 CHD9Q3L8U1 2897 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-215ENST00000555259 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-215ENST00000555259 HOXD11P31277 338 aaPredicted RBP11.89□□□□□ -0.51
SCFD1-215ENST00000555259 ZYXQ15942 572 aaKnown RBP11.89□□□□□ -0.51
SCFD1-215ENST00000555259 OLFML2BQ68BL8 750 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 LBX2Q6XYB7 198 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 CATSPERGQ6ZRH7 1159 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 MAPKAPK5Q8IW41 473 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 ADAMTS19Q8TE59 1207 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 TGFBRAP1Q8WUH2 860 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 SSH1Q8WYL5 1049 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 ASB2Q96Q27 587 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 AATFQ9NY61 560 aaKnown RBP eCLIP11.89□□□□□ -0.51
SCFD1-215ENST00000555259 THEGQ9P2T0 379 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 PALD1Q9ULE6 856 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 AKAP2Q9Y2D5 859 aa11.89□□□□□ -0.51
SCFD1-215ENST00000555259 GH2P01242 217 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 CLTBP09497 229 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 LRRC41Q15345 812 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 DPP9Q86TI2 863 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 PPM1EQ8WY54 764 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 TIFAQ96CG3 184 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 UHRF1Q96T88 793 aaPredicted RBP11.88□□□□□ -0.51
SCFD1-215ENST00000555259 FEZ1Q99689 392 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 NOL10Q9BSC4 688 aaKnown RBP11.88□□□□□ -0.51
SCFD1-215ENST00000555259 MRS2Q9HD23 443 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 SPDYE16A6NNV3 312 aaPredicted RBP11.88□□□□□ -0.51
SCFD1-215ENST00000555259 KIAA0355O15063 1070 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 BAG3O95817 575 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 RAG1P15918 1043 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 PLCG2P16885 1265 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 VCAM1P19320 739 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 ADORA2AP29274 412 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 FPGSQ05932 587 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 TFCP2Q12800 502 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 FAM47AQ5JRC9 791 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 NEUROD6Q96NK8 337 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 LRP2BPQ9P2M1 347 aa11.88□□□□□ -0.51
SCFD1-215ENST00000555259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.88□□□□□ -0.51
SCFD1-215ENST00000555259 CHD7Q9P2D1 2997 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 REV3LO60673 3130 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 ARID4AP29374 1257 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-215ENST00000555259 MCAMP43121 646 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 USP14P54578 494 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 PPP4CP60510 307 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 MRPS5P82675 430 aaKnown RBP11.87□□□□□ -0.51
SCFD1-215ENST00000555259 PRAMEF19Q5SWL8 479 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 AKNAD1Q5T1N1 836 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 GAS2L1Q99501 681 aaPredicted RBP11.87□□□□□ -0.51
SCFD1-215ENST00000555259 KIAA1683Q9H0B3 1180 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 SAP30BPQ9UHR5 308 aaKnown RBP11.87□□□□□ -0.51
SCFD1-215ENST00000555259 PHF24Q9UPV7 400 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 ZNF236Q9UL36 1845 aa11.87□□□□□ -0.51
SCFD1-215ENST00000555259 STRNO43815 780 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 HLA-DOAP06340 250 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 GORABQ5T7V8 394 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 NAA16Q6N069 864 aaPredicted RBP11.86□□□□□ -0.51
SCFD1-215ENST00000555259 ATF7IPQ6VMQ6 1270 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 ADGRA1Q86SQ6 560 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 MYO9BQ13459 2157 aa11.86□□□□□ -0.51
SCFD1-215ENST00000555259 FOCADQ5VW36 1801 aa11.85□□□□□ -0.51
SCFD1-215ENST00000555259 CDK5RAP2Q96SN8 1893 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms