RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 CHMP4BP1P59074 171 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 MCM6Q14566 821 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 SMC1AQ14683 1233 aaKnown RBP10.79□□□□□ -0.68
SYNE2-213ENST00000554805 SUSD4Q5VX71 490 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 CC2D1AQ6P1N0 951 aaPredicted RBP10.79□□□□□ -0.68
SYNE2-213ENST00000554805 IQCA1Q86XH1 822 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 RGS22Q8NE09 1264 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 NEK11Q8NG66 645 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 MRFAP1Q9Y605 127 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 CASP14P31944 242 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 NR1I3Q14994 352 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 SLC4A8Q2Y0W8 1093 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 CCDC152Q4G0S7 254 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 ZNF579Q8NAF0 562 aaKnown RBP10.79□□□□□ -0.68
SYNE2-213ENST00000554805 PAGE5Q96GU1 130 aa10.79□□□□□ -0.68
SYNE2-213ENST00000554805 PLEKHA8P1O95397 391 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 FGFR2P21802 821 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 TTC38Q5R3I4 469 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 MEX3CQ5U5Q3 659 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 JAKMIP3Q5VZ66 844 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RAD9BQ6WBX8 426 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 GNL3LQ9NVN8 582 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 KIF1AQ12756 1690 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RTL9Q8NET4 1388 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RHOXF2BP0C7M4 288 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 CD44P16070 742 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 GTF2E1P29083 439 aaPredicted RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 MCM7P33993 719 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 SARSP49591 514 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RABGGTAQ92696 567 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 CTAGE1Q96RT6 745 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RHOXF2Q9BQY4 288 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 TAB2Q9NYJ8 693 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 KCPQ6ZWJ8 1503 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 ZRANB2O95218 330 aaKnown RBP eCLIP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 GYG1P46976 350 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 DYNLL1P63167 89 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 EARS2Q5JPH6 523 aaKnown RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 ACRBPQ8NEB7 543 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 CTCFLQ8NI51 663 aaPredicted RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 MED15Q96RN5 788 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 RNF26Q9BY78 433 aaPredicted RBP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 AATFQ9NY61 560 aaKnown RBP eCLIP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 FAM53CQ9NYF3 392 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 NIP7Q9Y221 180 aaKnown RBP eCLIP10.78□□□□□ -0.68
SYNE2-213ENST00000554805 ADGRG1Q9Y653 693 aa10.78□□□□□ -0.68
SYNE2-213ENST00000554805 A0A087X0B3 334 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 A0A0U1RQJ8 604 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 A0A1B0GTH6 734 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 EXOC5O00471 708 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 GYS2P54840 703 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 PTGDRQ13258 359 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 PIK3AP1Q6ZUJ8 805 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 ATRIPQ8WXE1 791 aa10.77□□□□□ -0.68
SYNE2-213ENST00000554805 CTAGE9A4FU28 777 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 TXLNAP40222 546 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 TSR1Q2NL82 804 aaKnown RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 NOM1Q5C9Z4 860 aaKnown RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 SLC4A9Q96Q91 983 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 PANX2Q96RD6 677 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 ZSCAN10Q96SZ4 725 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 SPEF2Q9C093 1822 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 SASH3O75995 380 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 TBC1D8O95759 1140 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 FAM193AP78312 1265 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 CHRNDQ07001 517 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 CNGA4Q8IV77 575 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 ELOA2Q8IYF1 753 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 SLC35F6Q8N357 371 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 IQUBQ8NA54 791 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 FERMT2Q96AC1 680 aa10.77□□□□□ -0.69
SYNE2-213ENST00000554805 CDC5LQ99459 802 aaKnown RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 RNF216Q9NWF9 866 aaPredicted RBP10.77□□□□□ -0.69
SYNE2-213ENST00000554805 SOS2Q07890 1332 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-213ENST00000554805 NWD2Q9ULI1 1742 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 BMP15O95972 392 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 CDC25AP30304 524 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 LMAN1P49257 510 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 FAM98CQ17RN3 349 aaKnown RBP10.76□□□□□ -0.69
SYNE2-213ENST00000554805 LONRF2Q1L5Z9 754 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 NT5DC1Q5TFE4 455 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 SMIM5Q71RC9 77 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 ENAHQ8N8S7 591 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-213ENST00000554805 SLF1Q9BQI6 1058 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 TOM1O60784 492 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 ERLIN1O75477 346 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 FAM47AQ5JRC9 791 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 SRGAP1Q7Z6B7 1085 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 CEP112Q8N8E3 955 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 KIFC2Q96AC6 838 aa10.76□□□□□ -0.69
SYNE2-213ENST00000554805 ATRNO75882 1429 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 PLEKHG2Q9H7P9 1386 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ERVV-1B6SEH8 477 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 MFAP3LO75121 409 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CYP2C19P33261 490 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 IL6STP40189 918 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 HNRNPH2P55795 449 aaKnown RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ST5P78524 1137 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 BICDL1Q6ZP65 573 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 AK7Q96M32 723 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms