RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 HERVK_113P62684 666 aa21.95■■□□□ 1.1
SHMT2-206ENST00000553529 IRX6P78412 446 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-206ENST00000553529 ARHGEF6Q15052 776 aa21.95■■□□□ 1.1
SHMT2-206ENST00000553529 TMED8Q6PL24 325 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-206ENST00000553529 USP17L2Q6R6M4 530 aa21.95■■□□□ 1.1
SHMT2-206ENST00000553529 PAGR1Q9BTK6 254 aa21.95■■□□□ 1.1
SHMT2-206ENST00000553529 RBPJLQ9UBG7 517 aa21.95■■□□□ 1.1
SHMT2-206ENST00000553529 GSG1L2A8MUP6 293 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 C19orf81C9J6K1 198 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 RNF113AO15541 343 aaKnown RBP21.94■■□□□ 1.1
SHMT2-206ENST00000553529 CNMDO75829 334 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 VCAM1P19320 739 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 MX1P20591 662 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 HOXA7P31268 230 aaPredicted RBP21.94■■□□□ 1.1
SHMT2-206ENST00000553529 CDK8P49336 464 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 TRIM32Q13049 653 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 CCDC129Q6ZRS4 1044 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 PORCNQ9H237 461 aa21.94■■□□□ 1.1
SHMT2-206ENST00000553529 GNRH1P01148 92 aa21.93■■□□□ 1.1
SHMT2-206ENST00000553529 APPBP2Q92624 585 aa21.93■■□□□ 1.1
SHMT2-206ENST00000553529 GPATCH3Q96I76 525 aa21.93■■□□□ 1.1
SHMT2-206ENST00000553529 UNC93B1Q9H1C4 597 aa21.93■■□□□ 1.1
SHMT2-206ENST00000553529 ATP8A2Q9NTI2 1148 aa21.93■■□□□ 1.1
SHMT2-206ENST00000553529 KIAA0100Q14667 2235 aaKnown RBP21.92■■□□□ 1.1
SHMT2-206ENST00000553529 GPAA1O43292 621 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 ADCY3O60266 1144 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 B4GALNT3Q6L9W6 998 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 C12orf42Q96LP6 360 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 KIAA1683Q9H0B3 1180 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 RPAP3Q9H6T3 665 aaPredicted RBP21.92■■□□□ 1.1
SHMT2-206ENST00000553529 CABP5Q9NP86 173 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 GINM1Q9NU53 330 aa21.92■■□□□ 1.1
SHMT2-206ENST00000553529 TTC41PQ6P2S7 1318 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 CCL5P13501 91 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 HOXD10P28358 340 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 PRMT2P55345 433 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 PABPC4Q13310 644 aaKnown RBP eCLIP21.91■■□□□ 1.1
SHMT2-206ENST00000553529 C16orf86Q6ZW13 317 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 NBPF11Q86T75 865 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 SPICE1Q8N0Z3 855 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.91■■□□□ 1.15e-8■■■□□ 18.8
SHMT2-206ENST00000553529 LNPKQ9C0E8 428 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 MORF4L1Q9UBU8 362 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 BIN2Q9UBW5 565 aaPredicted RBP21.91■■□□□ 1.1
SHMT2-206ENST00000553529 GJD2Q9UKL4 321 aa21.91■■□□□ 1.1
SHMT2-206ENST00000553529 SUPT16HQ9Y5B9 1047 aaKnown RBP21.91■■□□□ 1.1
SHMT2-206ENST00000553529 RLFQ13129 1914 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 FOXP2O15409 715 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 INHAP05111 366 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 GCLCP48506 637 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-206ENST00000553529 HDAC1Q13547 482 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-206ENST00000553529 ZSCAN25Q6NSZ9 544 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 FSD1Q9BTV5 496 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 TMEM106CQ9BVX2 250 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 BTBD7Q9P203 1132 aa21.9■■□□□ 1.1
SHMT2-206ENST00000553529 GREB1LQ9C091 1923 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-206ENST00000553529 MINDY4BA8MYZ0 360 aa21.89■■□□□ 1.09
SHMT2-206ENST00000553529 CATSPERGQ6ZRH7 1159 aa21.89■■□□□ 1.09
SHMT2-206ENST00000553529 PRDM1O75626 825 aa21.88■■□□□ 1.09
SHMT2-206ENST00000553529 GLRX3O76003 335 aaKnown RBP21.88■■□□□ 1.09
SHMT2-206ENST00000553529 ERVK-9P63128 1117 aa21.88■■□□□ 1.09
SHMT2-206ENST00000553529 ERVK-24P63145 666 aa21.88■■□□□ 1.09
SHMT2-206ENST00000553529 SWAP70Q9UH65 585 aa21.88■■□□□ 1.09
SHMT2-206ENST00000553529 PARP14Q460N5 1801 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 SPDYE16A6NNV3 312 aaPredicted RBP21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L15C9J2P7 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L13C9JLJ4 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L11C9JVI0 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L18D6R9N7 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L22D6RA61 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L17D6RBQ6 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L19D6RCP7 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L20D6RJB6 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 CYP2B6P20813 491 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 PDE1AP54750 535 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 ATP2B2Q01814 1243 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 ICA1Q05084 483 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 USP17L24Q0WX57 530 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 SAMD1Q6SPF0 538 aaPredicted RBP21.87■■□□□ 1.09
SHMT2-206ENST00000553529 TMEM179Q6ZVK1 233 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 GPRC5AQ8NFJ5 357 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 COA7Q96BR5 231 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 RNF208Q9H0X6 261 aa21.87■■□□□ 1.09
SHMT2-206ENST00000553529 A0A0G2JMZ2 1700 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 EEF2P13639 858 aaKnown RBP21.86■■□□□ 1.09
SHMT2-206ENST00000553529 RASA1P20936 1047 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 CCL14Q16627 93 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 ZMYM1Q5SVZ6 1142 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 SLAIN1Q8ND83 568 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 TRIB2Q92519 343 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 INCENPQ9NQS7 918 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 TACC3Q9Y6A5 838 aa21.86■■□□□ 1.09
SHMT2-206ENST00000553529 ERC2O15083 957 aa21.85■■□□□ 1.09
SHMT2-206ENST00000553529 APPP05067 770 aa21.85■■□□□ 1.09
SHMT2-206ENST00000553529 VPS53Q5VIR6 699 aa21.85■■□□□ 1.09
SHMT2-206ENST00000553529 ARPP21Q9UBL0 812 aaPredicted RBP21.85■■□□□ 1.09
SHMT2-206ENST00000553529 TDO2P48775 406 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 USP14P54578 494 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 IRF5Q13568 498 aa21.84■■□□□ 1.09
SHMT2-206ENST00000553529 GPR142Q7Z601 462 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms