RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MAST2Q6P0Q8 1798 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 ATRNL1Q5VV63 1379 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 FAM196BA6NMK8 535 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 FOXN1O15353 648 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 INPP5BP32019 993 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 VGLL4Q14135 290 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 TPD52L1Q16890 204 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 SLC4A8Q2Y0W8 1093 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 TPRNQ4KMQ1 711 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 MAPKAPK5Q8IW41 473 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 ANKRD13AQ8IZ07 590 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 EVI5LQ96CN4 794 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 WRNIP1Q96S55 665 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 RIOK1Q9BRS2 568 aaKnown RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 NOL10Q9BSC4 688 aaKnown RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 OSBPL5Q9H0X9 879 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 ELP3Q9H9T3 547 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 TSKSQ9UJT2 592 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 CCDC192P0DO97 292 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 CYP2C19P33261 490 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 ADD2P35612 726 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 ANAPC15P60006 121 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 MAP3K9P80192 1104 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 MAP2K1Q02750 393 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-216ENST00000552909 SPRYD7Q5W111 196 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 CCDC186Q7Z3E2 898 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 TEX2Q8IWB9 1127 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 FEZ2Q9UHY8 353 aaPredicted RBP8.87□□□□□ -0.99
LIMA1-216ENST00000552909 PALD1Q9ULE6 856 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 THSD7BQ9C0I4 1608 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 BRCA2P51587 3418 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 HTTP42858 3142 aa8.87□□□□□ -0.99
LIMA1-216ENST00000552909 PHF20L1A8MW92 1017 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 NPM3O75607 178 aaKnown RBP8.86□□□□□ -0.99
LIMA1-216ENST00000552909 CEP135Q66GS9 1140 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 DRC7Q8IY82 874 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 FAM200AQ8TCP9 573 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 SAP30BPQ9UHR5 308 aaKnown RBP8.86□□□□□ -0.99
LIMA1-216ENST00000552909 SNCAIPQ9Y6H5 919 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 FLT1P17948 1338 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 PLCG2P16885 1265 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 HNRNPH2P55795 449 aaKnown RBP8.86□□□□□ -0.99
LIMA1-216ENST00000552909 MAP3K10Q02779 954 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 EVX2Q03828 476 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 LRMPQ12912 555 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 FBXO38Q6PIJ6 1188 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 LCORLQ8N3X6 602 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 ZNF592Q92610 1267 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 OPTNQ96CV9 577 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 WNK4Q96J92 1243 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 TRERF1Q96PN7 1200 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 ESYT1Q9BSJ8 1104 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 PUS7LQ9H0K6 701 aaKnown RBP8.86□□□□□ -0.99
LIMA1-216ENST00000552909 EFCC1Q9HA90 598 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-216ENST00000552909 ZNF112Q9UJU3 913 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 ATP6V1DQ9Y5K8 247 aa8.86□□□□□ -0.99
LIMA1-216ENST00000552909 FOCADQ5VW36 1801 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 MYH7P12883 1935 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 MAGEB6P1A0A0J9YX57 407 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 FIBPO43427 364 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 PRKAB2O43741 272 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ZSCAN22P10073 491 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 TNNT3P45378 269 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 RAD51AP2Q09MP3 1159 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 RRP1BQ14684 758 aaKnown RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 RNF20Q5VTR2 975 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 DCAF15Q66K64 600 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ZSCAN25Q6NSZ9 544 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 CWC27Q6UX04 472 aaKnown RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 KBTBD3Q8NAB2 608 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 RGS22Q8NE09 1264 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 SDR42E1Q8WUS8 393 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ERO1AQ96HE7 468 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ZFP91Q96JP5 570 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 FSD1Q9BTV5 496 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ZNF341Q9BYN7 854 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ARMT1Q9H993 441 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ZNF215Q9UL58 517 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 SIPA1L1O43166 1804 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 UNCXA6NJT0 531 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 TRPA1O75762 1119 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 BMS1Q14692 1282 aaKnown RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-216ENST00000552909 CERS3Q8IU89 383 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 OSBP2Q969R2 916 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 HOOK2Q96ED9 719 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 OTUD5Q96G74 571 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 DNAJC18Q9H819 358 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 ST7Q9NRC1 585 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 CSADQ9Y600 493 aa8.85□□□□□ -0.99
LIMA1-216ENST00000552909 MYH1P12882 1939 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 SMIM22K7EJ46 135 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 MBD4O95243 580 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 USP5P45974 858 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 PLCD1P51178 756 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 LBX1P52954 281 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 UBE3CQ15386 1083 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 CCDC84Q86UT8 332 aaPredicted RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms