RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ICA1Q05084 483 aa25■■□□□ 1.59
VPS29-206ENST00000549578 MKRN3Q13064 507 aaKnown RBP25■■□□□ 1.59
VPS29-206ENST00000549578 WNK4Q96J92 1243 aa25■■□□□ 1.59
VPS29-206ENST00000549578 KANSL2Q9H9L4 492 aa25■■□□□ 1.59
VPS29-206ENST00000549578 RASSF10A6NK89 507 aa24.99■■□□□ 1.59
VPS29-206ENST00000549578 NT5C2P49902 561 aa24.99■■□□□ 1.59
VPS29-206ENST00000549578 PPATQ06203 517 aa24.99■■□□□ 1.59
VPS29-206ENST00000549578 DEFB115Q30KQ5 88 aa24.99■■□□□ 1.59
VPS29-206ENST00000549578 CYP4F22Q6NT55 531 aa24.99■■□□□ 1.59
VPS29-206ENST00000549578 ANTXR2P58335 489 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 ATP2B2Q01814 1243 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 GRM1Q13255 1194 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 SPRYD7Q5W111 196 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 SIAH1Q8IUQ4 282 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 ACER1Q8TDN7 264 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 MTMR4Q9NYA4 1195 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 AFG3L2Q9Y4W6 797 aa24.98■■□□□ 1.59
VPS29-206ENST00000549578 TRIM75PA6NK02 468 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 IRF6O14896 467 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 SLC10A3P09131 477 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 EEF2P13639 858 aaKnown RBP24.97■■□□□ 1.59
VPS29-206ENST00000549578 CPA1P15085 419 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 ANAPC15P60006 121 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 SPP2Q13103 211 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 PPIL2Q13356 520 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 IQCA1Q86XH1 822 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 ZNF280CQ8ND82 737 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 AS3MTQ9HBK9 375 aa24.97■■□□□ 1.59
VPS29-206ENST00000549578 A0A1W2PRG0 241 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 MCM5P33992 734 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 ECE1P42892 770 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 UBAC1Q9BSL1 405 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 WDR18Q9BV38 432 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 TCP11L1Q9NUJ3 509 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 STX8Q9UNK0 236 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 FAM155AB1AL88 458 aaPredicted RBP24.96■■□□□ 1.59
VPS29-206ENST00000549578 PRC1O43663 620 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 CASTP20810 708 aaKnown RBP24.96■■□□□ 1.59
VPS29-206ENST00000549578 CCDC102AQ96A19 550 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 TCEANC2Q96MN5 208 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 ZSCAN10Q96SZ4 725 aaPredicted RBP24.96■■□□□ 1.59
VPS29-206ENST00000549578 CLIP2Q9UDT6 1046 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 TNKSO95271 1327 aa24.96■■□□□ 1.59
VPS29-206ENST00000549578 TTLL1O95922 423 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 ZBTB48P10074 688 aaPredicted RBP24.95■■□□□ 1.58
VPS29-206ENST00000549578 PSMA5P28066 241 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 RBM25P49756 843 aaKnown RBP24.95■■□□□ 1.58
VPS29-206ENST00000549578 BLOC1S2Q6QNY1 142 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 CAPNS2Q96L46 248 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 FEZ1Q99689 392 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 LRRC2Q9BYS8 371 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 TBC1D2Q9BYX2 928 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 ARHGEF10LQ9HCE6 1279 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 NYAP2Q9P242 653 aa24.95■■□□□ 1.58
VPS29-206ENST00000549578 HMGB1P09429 215 aaKnown RBP24.94■■□□□ 1.58
VPS29-206ENST00000549578 MTMR2Q13614 643 aa24.94■■□□□ 1.58
VPS29-206ENST00000549578 ZYXQ15942 572 aaKnown RBP24.94■■□□□ 1.58
VPS29-206ENST00000549578 RCSD1Q6JBY9 416 aa24.94■■□□□ 1.58
VPS29-206ENST00000549578 DHX32Q7L7V1 743 aaKnown RBP24.94■■□□□ 1.58
VPS29-206ENST00000549578 ENAHQ8N8S7 591 aaPredicted RBP24.94■■□□□ 1.58
VPS29-206ENST00000549578 TBC1D32Q96NH3 1257 aa24.94■■□□□ 1.58
VPS29-206ENST00000549578 MYH4Q9Y623 1939 aa24.94■■□□□ 1.58
VPS29-206ENST00000549578 IFIT3O14879 490 aaKnown RBP24.93■■□□□ 1.58
VPS29-206ENST00000549578 NOVP48745 357 aa24.93■■□□□ 1.58
VPS29-206ENST00000549578 DGKZQ13574 1117 aa24.93■■□□□ 1.58
VPS29-206ENST00000549578 LRRC47Q8N1G4 583 aaKnown RBP24.93■■□□□ 1.58
VPS29-206ENST00000549578 IL17RAQ96F46 866 aa24.93■■□□□ 1.58
VPS29-206ENST00000549578 UPF3BQ9BZI7 483 aaKnown RBP24.93■■□□□ 1.58
VPS29-206ENST00000549578 TM6SF1Q9BZW5 370 aa24.93■■□□□ 1.58
VPS29-206ENST00000549578 GPHNQ9NQX3 736 aaPredicted RBP24.93■■□□□ 1.58
VPS29-206ENST00000549578 KCNH4Q9UQ05 1017 aa24.93■■□□□ 1.58
VPS29-206ENST00000549578 USP17L10C9JJH3 530 aa24.92■■□□□ 1.58
VPS29-206ENST00000549578 BACE1P56817 501 aa24.92■■□□□ 1.58
VPS29-206ENST00000549578 EXOSC10Q01780 885 aaKnown RBP24.92■■□□□ 1.58
VPS29-206ENST00000549578 ZSWIM6Q9HCJ5 1215 aa24.92■■□□□ 1.58
VPS29-206ENST00000549578 PTPRFP10586 1907 aa24.92■■□□□ 1.58
VPS29-206ENST00000549578 RPS6KB1P23443 525 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 SART3Q15020 963 aaKnown RBP24.91■■□□□ 1.58
VPS29-206ENST00000549578 SEC23AQ15436 765 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 TMEM67Q5HYA8 995 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 KIAA1683Q9H0B3 1180 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 TMX2Q9Y320 296 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 CXCL11O14625 94 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 HMGCS2P54868 508 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 SNAPC2Q13487 334 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 CCDC178Q5BJE1 867 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 PPP4R3BQ5MIZ7 849 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 RUFY3Q7L099 469 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 DGKHQ86XP1 1220 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 IGDCC4Q8TDY8 1250 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 TTC14Q96N46 770 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 ZIC5Q96T25 663 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 KIF2CQ99661 725 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 TMEM47Q9BQJ4 181 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 SENP2Q9HC62 589 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 CYP46A1Q9Y6A2 500 aa24.91■■□□□ 1.58
VPS29-206ENST00000549578 WDR19Q8NEZ3 1342 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 A0A0G2JLL6 359 aaPredicted RBP24.9■■□□□ 1.58
VPS29-206ENST00000549578 ERICH2A1L162 156 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 VEGFBP49765 207 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms