RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 HOXD10P28358 340 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 HOXA7P31268 230 aaPredicted RBP18.79■□□□□ 0.6
CCDC78-216ENST00000544996 PSMC4P43686 418 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 ZYXQ15942 572 aaKnown RBP18.79■□□□□ 0.6
CCDC78-216ENST00000544996 IFNL3Q8IZI9 196 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 ARHGAP39Q9C0H5 1083 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 ZNF287Q9HBT7 754 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 EMILIN3Q9NT22 766 aa18.79■□□□□ 0.6
CCDC78-216ENST00000544996 SMIM22K7EJ46 135 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 FMNL1O95466 1100 aaPredicted RBP18.78■□□□□ 0.6
CCDC78-216ENST00000544996 AKR1B1P15121 316 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 GUCY1A2P33402 732 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 FCGRTP55899 365 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 ANKRD13CQ8N6S4 541 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 ACER1Q8TDN7 264 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 C12orf42Q96LP6 360 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 NAPBQ9H115 298 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 MKNK2Q9HBH9 465 aa18.78■□□□□ 0.6
CCDC78-216ENST00000544996 EPB41L4AQ9HCS5 686 aaPredicted RBP18.78■□□□□ 0.6
CCDC78-216ENST00000544996 ECM2O94769 699 aaPredicted RBP18.77■□□□□ 0.6
CCDC78-216ENST00000544996 SLC3A2P08195 630 aaKnown RBP18.77■□□□□ 0.6
CCDC78-216ENST00000544996 PRMT2P55345 433 aa18.77■□□□□ 0.6
CCDC78-216ENST00000544996 CAP1Q01518 475 aa18.77■□□□□ 0.6
CCDC78-216ENST00000544996 SH2D4AQ9H788 454 aa18.77■□□□□ 0.6
CCDC78-216ENST00000544996 ARHGEF10LQ9HCE6 1279 aa18.77■□□□□ 0.6
CCDC78-216ENST00000544996 ICA1Q05084 483 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 FAM110CQ1W6H9 321 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 MCMDC2Q4G0Z9 681 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 STK11IPQ8N1F8 1099 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 TRIM47Q96LD4 638 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 KANSL2Q9H9L4 492 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 PTPRFP10586 1907 aa18.76■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L15C9J2P7 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L13C9JLJ4 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L11C9JVI0 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L18D6R9N7 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L22D6RA61 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L17D6RBQ6 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L19D6RCP7 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L20D6RJB6 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 USP17L24Q0WX57 530 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 CCDC129Q6ZRS4 1044 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 GTF3C2Q8WUA4 911 aaPredicted RBP18.75■□□□□ 0.59
CCDC78-216ENST00000544996 FAM227BQ96M60 508 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 P2RX7Q99572 595 aaKnown RBP18.75■□□□□ 0.59
CCDC78-216ENST00000544996 SRRDQ9UH36 339 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 ROBO3Q96MS0 1386 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 LOC285556D6RIA3 1793 aa18.75■□□□□ 0.59
CCDC78-216ENST00000544996 A0A0D9SFI3 127 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 HIP1O00291 1037 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 VCAM1P19320 739 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 SDSP20132 328 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 MFAP1P55081 439 aaKnown RBP18.74■□□□□ 0.59
CCDC78-216ENST00000544996 HERVK_113P62684 666 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 PDE4BQ07343 736 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 NMIQ13287 307 aaPredicted RBP18.74■□□□□ 0.59
CCDC78-216ENST00000544996 NBPF11Q86T75 865 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 ZNF444Q8N0Y2 327 aaPredicted RBP18.74■□□□□ 0.59
CCDC78-216ENST00000544996 PTCH2Q9Y6C5 1203 aa18.74■□□□□ 0.59
CCDC78-216ENST00000544996 BAZ2AQ9UIF9 1905 aaKnown RBP18.74■□□□□ 0.59
CCDC78-216ENST00000544996 A0A1W2PRG0 241 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 TNPO2O14787 897 aaKnown RBP18.73■□□□□ 0.59
CCDC78-216ENST00000544996 RASA1P20936 1047 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 CTGFP29279 349 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 ATP2B2Q01814 1243 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 PPARAQ07869 468 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 SLC9C1Q4G0N8 1177 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 LPAR1Q92633 364 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 DIAPH3Q9NSV4 1193 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 MYPNQ86TC9 1320 aa18.73■□□□□ 0.59
CCDC78-216ENST00000544996 EEF2P13639 858 aaKnown RBP18.72■□□□□ 0.59
CCDC78-216ENST00000544996 PDE4AP27815 886 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 CATSPERGQ6ZRH7 1159 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 GPRC5AQ8NFJ5 357 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 RAET1EQ8TD07 263 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 COA7Q96BR5 231 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 RPAP3Q9H6T3 665 aaPredicted RBP18.72■□□□□ 0.59
CCDC78-216ENST00000544996 MORF4L1Q9UBU8 362 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 TMX2Q9Y320 296 aa18.72■□□□□ 0.59
CCDC78-216ENST00000544996 ALX1Q15699 326 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 VPS53Q5VIR6 699 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 CLEC10AQ8IUN9 316 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 SIAH1Q8IUQ4 282 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 CCAR1Q8IX12 1150 aaKnown RBP18.71■□□□□ 0.59
CCDC78-216ENST00000544996 ARMC5Q96C12 935 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 VCPKMTQ9H867 229 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 CCDC171Q6TFL3 1326 aa18.71■□□□□ 0.59
CCDC78-216ENST00000544996 FOXP2O15409 715 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 PRDM1O75626 825 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 SOX10P56693 466 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 TTC22Q5TAA0 569 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 CWC27Q6UX04 472 aaKnown RBP18.7■□□□□ 0.58
CCDC78-216ENST00000544996 TANGO6Q9C0B7 1094 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 GOPCQ9HD26 462 aa18.7■□□□□ 0.58
CCDC78-216ENST00000544996 TSPY3P0CV98 308 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 TSPY8P0CW00 308 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 HSPD1P10809 573 aaKnown RBP18.69■□□□□ 0.58
CCDC78-216ENST00000544996 PRKCZQ05513 592 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 COG2Q14746 738 aa18.69■□□□□ 0.58
CCDC78-216ENST00000544996 ZNF589Q86UQ0 364 aaPredicted RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms