RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 DDX12PQ92771 950 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 EDC3Q96F86 508 aaKnown RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 P2RX7Q99572 595 aaKnown RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 CHMP4AQ9BY43 222 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 BOLA1Q9Y3E2 137 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 DAGLAQ9Y4D2 1042 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 MYH13Q9UKX3 1938 aa6.01□□□□□ -1.45
LIMS1-214ENST00000542845 LAMA2P24043 3122 aaKnown RBP6.01□□□□□ -1.45
LIMS1-214ENST00000542845 DDTLA6NHG4 134 aaPredicted RBP6□□□□□ -1.45
LIMS1-214ENST00000542845 DNM1LO00429 736 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 XRCC5P13010 732 aaKnown RBP6□□□□□ -1.45
LIMS1-214ENST00000542845 RAG1P15918 1043 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 MAPK4P31152 587 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 CYP2C19P33261 490 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 PBX2P40425 430 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 ADCYAP1R1P41586 468 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 KCNQ1P51787 676 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 FPGSQ05932 587 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 SH3BP5LQ7L8J4 393 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 GPR142Q7Z601 462 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 PLEKHH3Q7Z736 793 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 ARRDC4Q8NCT1 418 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 ZNF280CQ8ND82 737 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 LINS1Q8NG48 757 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 SOCS4Q8WXH5 440 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 DNAAF4Q8WXU2 420 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 LPAR1Q92633 364 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 UIMC1Q96RL1 719 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 PORCNQ9H237 461 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6□□□□□ -1.45
LIMS1-214ENST00000542845 TXNRD2Q9NNW7 524 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 PDLIM7Q9NR12 457 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 IFT57Q9NWB7 429 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 C9orf78Q9NZ63 289 aaPredicted RBP6□□□□□ -1.45
LIMS1-214ENST00000542845 FLRT1Q9NZU1 646 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 MORF4L1Q9UBU8 362 aa6□□□□□ -1.45
LIMS1-214ENST00000542845 DDX20Q9UHI6 824 aaKnown RBP6□□□□□ -1.45
LIMS1-214ENST00000542845 RLFQ13129 1914 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 F6X3S4 739 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 GPR37O15354 613 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 LDHBP07195 334 aaKnown RBP5.99□□□□□ -1.45
LIMS1-214ENST00000542845 ZNF853P0CG23 659 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 BMP1P13497 986 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 ITGB8P26012 769 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 PRDX5P30044 214 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 HERVK_113P62684 666 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 TLE2Q04725 743 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 FLIIQ13045 1269 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 ADGRE1Q14246 886 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 LRRC24Q50LG9 513 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 AKNAD1Q5T1N1 836 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 PARP9Q8IXQ6 854 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 WDR66Q8TBY9 1149 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 APBA2Q99767 749 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 TMOD4Q9NZQ9 345 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 RBPJLQ9UBG7 517 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 CDH23Q9H251 3354 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 ATAD5Q96QE3 1844 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 MUC3AQ02505 3323 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 MROH5Q6ZUA9 1318 aa5.99□□□□□ -1.45
LIMS1-214ENST00000542845 MYH2Q9UKX2 1941 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 USP17L5A8MUK1 530 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 SMIM22K7EJ46 135 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 APBB1O00213 710 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TBC1D12O60347 775 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 MSCO60682 206 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 PQBP1O60828 265 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 ENTPD3O75355 529 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 GLRX3O76003 335 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 CLTBP09497 229 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 IFIT1P09914 478 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 ERVK-9P63128 1117 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 ERVK-24P63145 666 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 CALD1Q05682 793 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 MTMR2Q13614 643 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 HIC1Q14526 733 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 AAK1Q2M2I8 961 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TWISTNBQ3B726 338 aaPredicted RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 PRAMEF19Q5SWL8 479 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 MORN1Q5T089 497 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 PDCD7Q8N8D1 485 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 USP6NLQ92738 828 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TSR2Q969E8 191 aaKnown RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 PBX4Q9BYU1 374 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 NKX2-4Q9H2Z4 354 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 AS3MTQ9HBK9 375 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TMEM39AQ9NV64 488 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 CXXC1Q9P0U4 656 aaPredicted RBP5.98□□□□□ -1.45
LIMS1-214ENST00000542845 ADAMTS8Q9UP79 889 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 SUGT1Q9Y2Z0 365 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TACC3Q9Y6A5 838 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 LOC285556D6RIA3 1793 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 TTC28Q96AY4 2481 aa5.98□□□□□ -1.45
LIMS1-214ENST00000542845 DNAH12Q6ZR08 3092 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 MYO9BQ13459 2157 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 APAF1O14727 1248 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 PDE8BO95263 885 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 SLC4A10Q6U841 1118 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 DPP9Q86TI2 863 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms