RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 MGAMO43451 1857 aa18.05■□□□□ 0.48
UBE3B-212ENST00000540230 A0A1W2PRG0 241 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 MINDY4BA8MYZ0 360 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 C19orf81C9J6K1 198 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 PATL2C9JE40 543 aaKnown RBP18.04■□□□□ 0.48
UBE3B-212ENST00000540230 APPP05067 770 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 GNAT2P19087 354 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 TDO2P48775 406 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 VPS53Q5VIR6 699 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 SMCR8Q8TEV9 937 aaPredicted RBP18.04■□□□□ 0.48
UBE3B-212ENST00000540230 TMOD4Q9NZQ9 345 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 PTPN22Q9Y2R2 807 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 ROBO3Q96MS0 1386 aa18.04■□□□□ 0.48
UBE3B-212ENST00000540230 GREB1LQ9C091 1923 aaPredicted RBP18.04■□□□□ 0.48
UBE3B-212ENST00000540230 TRIM47Q96LD4 638 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 FEZ1Q99689 392 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 PEX10O60683 326 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 NMIQ13287 307 aaPredicted RBP18.03■□□□□ 0.48
UBE3B-212ENST00000540230 USP17L2Q6R6M4 530 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 TMEM179Q6ZVK1 233 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 SIAH1Q8IUQ4 282 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 ANKRD13CQ8N6S4 541 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 C12orf42Q96LP6 360 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 KIAA1683Q9H0B3 1180 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 PNMA3Q9UL41 463 aa18.03■□□□□ 0.48
UBE3B-212ENST00000540230 HOXA7P31268 230 aaPredicted RBP18.02■□□□□ 0.47
UBE3B-212ENST00000540230 PSMC4P43686 418 aa18.02■□□□□ 0.47
UBE3B-212ENST00000540230 ZNF589Q86UQ0 364 aaPredicted RBP18.02■□□□□ 0.47
UBE3B-212ENST00000540230 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.02■□□□□ 0.47
UBE3B-212ENST00000540230 TAOK2Q9UL54 1235 aa18.02■□□□□ 0.47
UBE3B-212ENST00000540230 PTCH2Q9Y6C5 1203 aa18.02■□□□□ 0.47
UBE3B-212ENST00000540230 RASA1P20936 1047 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 OSBPP22059 807 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 PABPC4Q13310 644 aaKnown RBP eCLIP18.01■□□□□ 0.47
UBE3B-212ENST00000540230 KIF22Q14807 665 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 KIAA1755Q5JYT7 1200 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 POTEEQ6S8J3 1075 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 CCDC17Q96LX7 622 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 P2RX7Q99572 595 aaKnown RBP18.01■□□□□ 0.47
UBE3B-212ENST00000540230 HELLSQ9NRZ9 838 aa18.01■□□□□ 0.47
UBE3B-212ENST00000540230 PRDM1O75626 825 aa18■□□□□ 0.47
UBE3B-212ENST00000540230 GSPT1P15170 499 aaKnown RBP18■□□□□ 0.47
UBE3B-212ENST00000540230 VCAM1P19320 739 aa18■□□□□ 0.47
UBE3B-212ENST00000540230 IRX3P78415 501 aaPredicted RBP18■□□□□ 0.47
UBE3B-212ENST00000540230 ICA1Q05084 483 aa18■□□□□ 0.47
UBE3B-212ENST00000540230 NAPBQ9H115 298 aa18■□□□□ 0.47
UBE3B-212ENST00000540230 DOCK3Q8IZD9 2030 aa18■□□□□ 0.47
UBE3B-212ENST00000540230 SDSP20132 328 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 USP14P54578 494 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 HERVK_113P62684 666 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 FAM110CQ1W6H9 321 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 MCMDC2Q4G0Z9 681 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 NACAP1Q9BZK3 213 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 TXNRD2Q9NNW7 524 aa17.99■□□□□ 0.47
UBE3B-212ENST00000540230 FMNL1O95466 1100 aaPredicted RBP17.98■□□□□ 0.47
UBE3B-212ENST00000540230 SOX10P56693 466 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 PPARAQ07869 468 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 TACC3Q9Y6A5 838 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 EEF2P13639 858 aaKnown RBP17.98■□□□□ 0.47
UBE3B-212ENST00000540230 GCLCP48506 637 aaPredicted RBP17.98■□□□□ 0.47
UBE3B-212ENST00000540230 ARHGEF6Q15052 776 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 RPAP3Q9H6T3 665 aaPredicted RBP17.98■□□□□ 0.47
UBE3B-212ENST00000540230 MKNK2Q9HBH9 465 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 SRRDQ9UH36 339 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 GABRQQ9UN88 632 aa17.98■□□□□ 0.47
UBE3B-212ENST00000540230 RLFQ13129 1914 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 FCGRTP55899 365 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 PRKCZQ05513 592 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 CTDSPL2Q05D32 466 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 TTC22Q5TAA0 569 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 CATSPERGQ6ZRH7 1159 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 TICAM2Q86XR7 235 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 INCENPQ9NQS7 918 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 RBPJLQ9UBG7 517 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 TMX2Q9Y320 296 aa17.97■□□□□ 0.47
UBE3B-212ENST00000540230 CCDC171Q6TFL3 1326 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 MKI67P46013 3256 aaKnown RBP17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L15C9J2P7 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L13C9JLJ4 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L11C9JVI0 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L18D6R9N7 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L22D6RA61 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L17D6RBQ6 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L19D6RCP7 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L20D6RJB6 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 GNRH1P01148 92 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 HSPD1P10809 573 aaKnown RBP17.96■□□□□ 0.47
UBE3B-212ENST00000540230 ATP2B2Q01814 1243 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 USP17L24Q0WX57 530 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 SPICE1Q8N0Z3 855 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 IL25Q9H293 177 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 ARHGEF10LQ9HCE6 1279 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 MORF4L1Q9UBU8 362 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 MYPNQ86TC9 1320 aa17.96■□□□□ 0.47
UBE3B-212ENST00000540230 IGKV6D-41A0A0C4DH26 115 aa17.95■□□□□ 0.46
UBE3B-212ENST00000540230 Q3C1V9 767 aa17.95■□□□□ 0.46
UBE3B-212ENST00000540230 CWC27Q6UX04 472 aaKnown RBP17.95■□□□□ 0.46
UBE3B-212ENST00000540230 SKAP1Q86WV1 359 aa17.95■□□□□ 0.46
UBE3B-212ENST00000540230 SH3TC2Q8TF17 1288 aa17.95■□□□□ 0.46
UBE3B-212ENST00000540230 PAGR1Q9BTK6 254 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms