RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FOXD4L6Q3SYB3 417 aaPredicted RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 DNAJC21Q5F1R6 531 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 FOXD4L3Q6VB84 417 aaPredicted RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 NOL8Q76FK4 1167 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 NBPF11Q86T75 865 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 MSANTD4Q8NCY6 345 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 PI4K2BQ8TCG2 481 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 PGBD1Q96JS3 809 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 SLC4A9Q96Q91 983 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 EIF3CQ99613 913 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 STK31Q9BXU1 1019 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 ST7Q9NRC1 585 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 DNAAF2Q9NVR5 837 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 RBM28Q9NW13 759 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 PARP3Q9Y6F1 533 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 RFX7Q2KHR2 1363 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 CRB1P82279 1406 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 MYH8P13535 1937 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 TMCO5BA8MYB1 307 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 CDK2AP1O14519 115 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 STX10O60499 249 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 LMAN1P49257 510 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ST5P78524 1137 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 CAMK4Q16566 473 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ME3Q16798 604 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 LONRF2Q1L5Z9 754 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 HSP90B2PQ58FF3 399 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 CCDC30Q5VVM6 783 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 CCDC102BQ68D86 513 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ELOA2Q8IYF1 753 aaPredicted RBP7.68□□□□□ -1.18
USP28-207ENST00000538475 ENGASEQ8NFI3 743 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 TPCN2Q8NHX9 752 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 MAP4K1Q92918 833 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 EVI5LQ96CN4 794 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 JAKMIP1Q96N16 626 aaKnown RBP7.68□□□□□ -1.18
USP28-207ENST00000538475 RUBCNLQ9H714 662 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ZNF358Q9NW07 568 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 SLC52A1Q9NWF4 448 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 TRMT1Q9NXH9 659 aaKnown RBP7.68□□□□□ -1.18
USP28-207ENST00000538475 CABP1Q9NZU7 370 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.68□□□□□ -1.18
USP28-207ENST00000538475 MRFAP1Q9Y605 127 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ADCY9O60503 1353 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 ABCC6O95255 1503 aa7.68□□□□□ -1.18
USP28-207ENST00000538475 PALM3A6NDB9 673 aaPredicted RBP7.67□□□□□ -1.18
USP28-207ENST00000538475 ELL2O00472 640 aaPredicted RBP7.67□□□□□ -1.18
USP28-207ENST00000538475 URI1O94763 535 aaPredicted RBP7.67□□□□□ -1.18
USP28-207ENST00000538475 LORP23490 312 aaPredicted RBP7.67□□□□□ -1.18
USP28-207ENST00000538475 SETQ01105 290 aaPredicted RBP7.67□□□□□ -1.18
USP28-207ENST00000538475 SATB1Q01826 763 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 PPP2R3AQ06190 1150 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 EFHC2Q5JST6 749 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 BLOC1S2Q6QNY1 142 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 CDC37L1Q7L3B6 337 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 TADA2BQ86TJ2 420 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 OGFOD1Q8N543 542 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 RHPN1Q8TCX5 695 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 PRAM1Q96QH2 718 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 CARD6Q9BX69 1037 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 CXorf56Q9H5V9 222 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 EXOC6BQ9Y2D4 811 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 USP16Q9Y5T5 823 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 ALKQ9UM73 1620 aa7.67□□□□□ -1.18
USP28-207ENST00000538475 C21orf2O43822 256 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 SASH3O75995 380 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 CLSTN1O94985 981 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 HMGB1P09429 215 aaKnown RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 ERCC3P19447 782 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 RPS6KB1P23443 525 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MAP2K2P36507 400 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 AARSP49588 968 aaKnown RBP eCLIP7.66□□□□□ -1.18
USP28-207ENST00000538475 NLRP12P59046 1061 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 CLDN10P78369 228 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 ST3GAL1Q11201 340 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MTX1Q13505 466 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MTFR1Q15390 333 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MAP9Q49MG5 647 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 CT47A1Q5JQC4 288 aaPredicted RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 ADALQ6DHV7 355 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 TTLL5Q6EMB2 1281 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 TMEM132EQ6IEE7 984 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 ARMCX5Q6P1M9 558 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 C11orf57Q6ZUT1 292 aaPredicted RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 SRGAP1Q7Z6B7 1085 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 LARGE2Q8N3Y3 721 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 AFAP1Q8N556 730 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 ANKRD20A12PQ8NF67 263 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 SMARCC2Q8TAQ2 1214 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 RUBCNQ92622 972 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 ZNF594Q96JF6 807 aaPredicted RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 NAA15Q9BXJ9 866 aaKnown RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 PARD6BQ9BYG5 372 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 PPP1R12CQ9BZL4 782 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MYO1AQ9UBC5 1043 aa7.66□□□□□ -1.18
USP28-207ENST00000538475 MAFBQ9Y5Q3 323 aaPredicted RBP7.66□□□□□ -1.18
USP28-207ENST00000538475 LOC102724159A0A0B4J2E5 919 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 H3BQV1 296 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 LARGE1O95461 756 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 YEATS4O95619 227 aa7.65□□□□□ -1.18
USP28-207ENST00000538475 UBTFL1P0CB47 393 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms