RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PCGF6Q9BYE7 350 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 IFT57Q9NWB7 429 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 CHD7Q9P2D1 2997 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 RLFQ13129 1914 aa8.17□□□□□ -1.1
CD44-237ENST00000534082 FAM86C2PA6NEL3 165 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 SLURP2P0DP57 97 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 CNGA1P29973 690 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 MAPK4P31152 587 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 RGS3P49796 1198 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 IRX3P78415 501 aaPredicted RBP8.16□□□□□ -1.1
CD44-237ENST00000534082 SPP2Q13103 211 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 SNX17Q15036 470 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 RFX7Q2KHR2 1363 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 CAVIN4Q5BKX8 364 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 GJC2Q5T442 439 aaPredicted RBP8.16□□□□□ -1.1
CD44-237ENST00000534082 G2E3Q7L622 706 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 SH3BP5LQ7L8J4 393 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 ZSCAN29Q8IWY8 852 aaPredicted RBP8.16□□□□□ -1.1
CD44-237ENST00000534082 MRPL50Q8N5N7 158 aaKnown RBP8.16□□□□□ -1.1
CD44-237ENST00000534082 LINS1Q8NG48 757 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 STK31Q9BXU1 1019 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 SLC4A5Q9BY07 1137 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 TXNRD2Q9NNW7 524 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 C11orf16Q9NQ32 467 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 USP40Q9NVE5 1235 aa8.16□□□□□ -1.1
CD44-237ENST00000534082 UTYO14607 1347 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 PPP1R3GB7ZBB8 358 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 KBTBD13C9JR72 458 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 IGFBP4P22692 258 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 ITGB8P26012 769 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 KCNQ1P51787 676 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 PTPN5P54829 565 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 GNAI1P63096 354 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 MAP3K10Q02779 954 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 TFF2Q03403 129 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 FPGSQ05932 587 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 PROX2Q3B8N5 592 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 EPHA10Q5JZY3 1008 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 MORN1Q5T089 497 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 MFSD14CQ5VZR4 134 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 GPR142Q7Z601 462 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 PLEKHH3Q7Z736 793 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 CCAR1Q8IX12 1150 aaKnown RBP8.15□□□□□ -1.1
CD44-237ENST00000534082 ZNF280CQ8ND82 737 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 GPRC5AQ8NFJ5 357 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 RUNDC1Q96C34 613 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 EPAS1Q99814 870 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 PUS3Q9BZE2 481 aaKnown RBP8.15□□□□□ -1.1
CD44-237ENST00000534082 PORCNQ9H237 461 aa8.15□□□□□ -1.1
CD44-237ENST00000534082 TCF20Q9UGU0 1960 aaKnown RBP8.15□□□□□ -1.11
CD44-237ENST00000534082 MROH5Q6ZUA9 1318 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 MYBBP1AQ9BQG0 1328 aaKnown RBP8.14□□□□□ -1.11
CD44-237ENST00000534082 GPR37L1O60883 481 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 ENTPD3O75355 529 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 ZEB1P37275 1124 aaPredicted RBP8.14□□□□□ -1.11
CD44-237ENST00000534082 HERVK_113P62684 666 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 TLE2Q04725 743 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 MAP2K5Q13163 448 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 NBR1Q14596 966 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 AAK1Q2M2I8 961 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 CCDC129Q6ZRS4 1044 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 TSPYL6Q8N831 410 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 ARRDC4Q8NCT1 418 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 DNAAF4Q8WXU2 420 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 PBX4Q9BYU1 374 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 CWC22Q9HCG8 908 aaKnown RBP8.14□□□□□ -1.11
CD44-237ENST00000534082 FLRT1Q9NZU1 646 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 WDFY4Q6ZS81 3184 aa8.14□□□□□ -1.11
CD44-237ENST00000534082 DDTLA6NHG4 134 aaPredicted RBP8.13□□□□□ -1.11
CD44-237ENST00000534082 FAM196BA6NMK8 535 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 GRXCR1A8MXD5 290 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 CLTBP09497 229 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 RAG1P15918 1043 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 PRDX5P30044 214 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 ERVK-9P63128 1117 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 ERVK-24P63145 666 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 FLIIQ13045 1269 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 FKBP5Q13451 457 aaPredicted RBP8.13□□□□□ -1.11
CD44-237ENST00000534082 SH3D19Q5HYK7 790 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 C1orf53Q5VUE5 145 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 MICALL1Q8N3F8 863 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 TRPV1Q8NER1 839 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 WDR66Q8TBY9 1149 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 FERMT2Q96AC1 680 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 PAGR1Q9BTK6 254 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 IDI2Q9BXS1 227 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 TBC1D2Q9BYX2 928 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 TACC3Q9Y6A5 838 aa8.13□□□□□ -1.11
CD44-237ENST00000534082 LRRC37A2A6NM11 1700 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 KIF16BQ96L93 1317 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 KIAA0355O15063 1070 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 CYBAP13498 195 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 CYP2C19P33261 490 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 ADCYAP1R1P41586 468 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 CALD1Q05682 793 aaKnown RBP8.12□□□□□ -1.11
CD44-237ENST00000534082 MTMR2Q13614 643 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 METTL24Q5JXM2 366 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 C6orf132Q5T0Z8 1188 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 ANO1Q5XXA6 986 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 EDC3Q96F86 508 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms