RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 ME3Q16798 604 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 CCDC152Q4G0S7 254 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 INTS5Q6P9B9 1019 aaKnown RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 DHX32Q7L7V1 743 aaKnown RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 FAM43AQ8N2R8 423 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 BEND7Q8N7W2 519 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 VGLL2Q8N8G2 317 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 FAM184AQ8NB25 1140 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 JARID2Q92833 1246 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 SYTL4Q96C24 671 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 ZNF274Q96GC6 653 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 CDC5LQ99459 802 aaKnown RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 UTP14AQ9BVJ6 771 aaKnown RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 GZF1Q9H116 711 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 NUCKS1Q9H1E3 243 aaKnown RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 CNNM1Q9NRU3 951 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 RAB6BQ9NRW1 208 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 TBC1D2BQ9UPU7 963 aa6.56□□□□□ -1.36
PCF11-205ENST00000530906 ZNF330Q9Y3S2 320 aaPredicted RBP6.56□□□□□ -1.36
PCF11-205ENST00000530906 NHSQ6T4R5 1651 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 THSD7AQ9UPZ6 1657 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 LAMA4Q16363 1823 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 DOCK2Q92608 1830 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 MAST3O60307 1309 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 AKAP11Q9UKA4 1901 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 PHF20L1A8MW92 1017 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 OIP5O43482 229 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 DHX16O60231 1041 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 PFKFB2O60825 505 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CAMTA2O94983 1202 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CYP21A2P08686 494 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 HSPD1P10809 573 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 SLC5A1P13866 664 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 TIMM10P62072 90 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CENPCQ03188 943 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CCDC173Q0VFZ6 552 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 TOB2Q14106 344 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 HLFQ16534 295 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 IMMTQ16891 758 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 PLA2G4EQ3MJ16 856 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 ZSCAN23Q3MJ62 389 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 HS1BP3Q53T59 392 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CAVIN1Q6NZI2 390 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 LRSAM1Q6UWE0 723 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 NOL8Q76FK4 1167 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 CCDC83Q8IWF9 413 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 MARCH10Q8NA82 808 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 NEDD1Q8NHV4 660 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 GTF3C6Q969F1 213 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 CNKSR1Q969H4 720 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 ZNF594Q96JF6 807 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 CCDC85AQ96PX6 553 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 MTA3Q9BTC8 594 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 PUS3Q9BZE2 481 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 SCAND2PQ9GZW5 306 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 ZSCAN16Q9H4T2 348 aaPredicted RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 TPCN1Q9ULQ1 816 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 MTMR6Q9Y217 621 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 NDUFB9Q9Y6M9 179 aa6.55□□□□□ -1.36
PCF11-205ENST00000530906 DDX60Q8IY21 1712 aaKnown RBP6.55□□□□□ -1.36
PCF11-205ENST00000530906 KAT6BQ8WYB5 2073 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 UBN2Q6ZU65 1347 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 GNAT2P19087 354 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 FGFR2P21802 821 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 GPTP24298 496 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 IGHMBP2P38935 993 aaKnown RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 NASPP49321 788 aaPredicted RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 NT5C2P49902 561 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 KRT85P78386 507 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 FGD1P98174 961 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 UBAP2LQ14157 1087 aaKnown RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 ALX1Q15699 326 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 CCDC183Q5T5S1 534 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 LARP1BQ659C4 914 aaKnown RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 NAA16Q6N069 864 aaPredicted RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 FNBP4Q8N3X1 1017 aaPredicted RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 GPT2Q8TD30 523 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 EDC3Q96F86 508 aaKnown RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 ARXQ96QS3 562 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 PPP1R9BQ96SB3 815 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 MPHOSPH8Q99549 860 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 FHDC1Q9C0D6 1143 aaPredicted RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 NYXQ9GZU5 481 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 GREM2Q9H772 168 aa6.54□□□□□ -1.36
PCF11-205ENST00000530906 NSFL1CQ9UNZ2 370 aaKnown RBP6.54□□□□□ -1.36
PCF11-205ENST00000530906 BCL9LQ86UU0 1499 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 COL24A1Q17RW2 1714 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 PDS5AQ29RF7 1337 aaKnown RBP6.53□□□□□ -1.36
PCF11-205ENST00000530906 MYH14Q7Z406 1995 aaKnown RBP6.53□□□□□ -1.36
PCF11-205ENST00000530906 E7EWF7 191 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 LARGE1O95461 756 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 NTSR2O95665 410 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 MCM5P33992 734 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 ADD2P35612 726 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 EXOSC10Q01780 885 aaKnown RBP6.53□□□□□ -1.36
PCF11-205ENST00000530906 FKBP4Q02790 459 aaKnown RBP eCLIP6.53□□□□□ -1.36
PCF11-205ENST00000530906 MAP3K12Q12852 859 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 SF3B3Q15393 1217 aaKnown RBP6.53□□□□□ -1.36
PCF11-205ENST00000530906 UVSSAQ2YD98 709 aa6.53□□□□□ -1.36
PCF11-205ENST00000530906 SLC10A5Q5PT55 438 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms