RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 STK32BQ9NY57 414 aa17.01■□□□□ 0.31
ECHDC1-220ENST00000528402 V9GY48 417 aaPredicted RBP17.01■□□□□ 0.31
ECHDC1-220ENST00000528402 FOCADQ5VW36 1801 aa17.01■□□□□ 0.31
ECHDC1-220ENST00000528402 MYH1P12882 1939 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 SMIM22K7EJ46 135 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 SMARCA1P28370 1054 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 ANO6Q4KMQ2 910 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 C2CD5Q86YS7 1000 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 MAPKAPK5Q8IW41 473 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 CCDC82Q8N4S0 544 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 KRI1Q8N9T8 703 aaKnown RBP17■□□□□ 0.31
ECHDC1-220ENST00000528402 NEDD1Q8NHV4 660 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 USP25Q9UHP3 1055 aa17■□□□□ 0.31
ECHDC1-220ENST00000528402 NOL7Q9UMY1 257 aaKnown RBP17■□□□□ 0.31
ECHDC1-220ENST00000528402 A0A1B0GVL5 298 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 RIMBP2O15034 1052 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 ZNF202O95125 648 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 MSNP26038 577 aaKnown RBP16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 CALML3P27482 149 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 CDK8P49336 464 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 ZNF165P49910 485 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 NDUFA8P51970 172 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 HDLBPQ00341 1268 aaKnown RBP16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 GRM4Q14833 912 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 ZRSR1Q15695 479 aaKnown RBP16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 SLC15A2Q16348 729 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 PPP4R3BQ5MIZ7 849 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 PNMA1Q8ND90 353 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 ZNF622Q969S3 477 aaKnown RBP eCLIP16.99■□□□□ 0.311e-7■□□□□ 9.8
ECHDC1-220ENST00000528402 KCNJ14Q9UNX9 436 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 HPSEQ9Y251 543 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 FLT1P17948 1338 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 MYO3BQ8WXR4 1341 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 CNTNAP5Q8WYK1 1306 aa16.99■□□□□ 0.31
ECHDC1-220ENST00000528402 ADCY5O95622 1261 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 SCG2P13521 617 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 RASA1P20936 1047 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 SYKP43405 635 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 TRAPPC10P48553 1259 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 PFKFB3Q16875 520 aaPredicted RBP16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 RESP18Q5W5W9 173 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 GALNT17Q6IS24 598 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 SRBD1Q8N5C6 995 aaKnown RBP16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 SUPT20HQ8NEM7 779 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 IL17RBQ9NRM6 502 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 FAM13BQ9NYF5 915 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 KIAA1468Q9P260 1216 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 HOOK1Q9UJC3 728 aaKnown RBP16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 DAGLAQ9Y4D2 1042 aa16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 DDX60LQ5H9U9 1706 aaKnown RBP16.98■□□□□ 0.31
ECHDC1-220ENST00000528402 GOLGA6L6A8MZA4 724 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 WDHD1O75717 1129 aaPredicted RBP16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 PLEKHA8P1O95397 391 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 PTMAP06454 111 aaKnown RBP16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 PFKFB1P16118 471 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 PTPREP23469 700 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 PLCD1P51178 756 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 SLC51AQ86UW1 340 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 DYNLL2Q96FJ2 89 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 CCDC34Q96HJ3 373 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 CAMKK2Q96RR4 588 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 CBX8Q9HC52 389 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 SWAP70Q9UH65 585 aa16.97■□□□□ 0.31
ECHDC1-220ENST00000528402 TRIM75PA6NK02 468 aa16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 NMT2O60551 498 aa16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 MARCKSP29966 332 aaPredicted RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 NOVP48745 357 aa16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 TOB1P50616 345 aaPredicted RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 CMTR1Q8N1G2 835 aaKnown RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 TEKT1Q969V4 418 aa16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 TTF2Q9UNY4 1162 aaKnown RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 SRPRBQ9Y5M8 271 aaKnown RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 COL11A2P13942 1736 aaPredicted RBP16.96■□□□□ 0.31
ECHDC1-220ENST00000528402 GOLGA6L19H0YKK7 550 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 TOP1P11387 765 aaKnown RBP16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 STRIP1Q5VSL9 837 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 KANK3Q6NY19 840 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 CEP57L1Q8IYX8 460 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 BPIFA3Q9BQP9 254 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 RRAGDQ9NQL2 400 aaPredicted RBP16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 VPS54Q9P1Q0 977 aa16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 SAP30BPQ9UHR5 308 aaKnown RBP16.96■□□□□ 0.3
ECHDC1-220ENST00000528402 PLIN4Q96Q06 1357 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 UBE2Q2LH0YL09 131 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 NPM3O75607 178 aaKnown RBP16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 NLRP5P59047 1200 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 CCDC148Q8NFR7 591 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 FERMT2Q96AC1 680 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 TMEM47Q9BQJ4 181 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 CABP5Q9NP86 173 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 ZKSCAN5Q9Y2L8 839 aa16.95■□□□□ 0.3
ECHDC1-220ENST00000528402 PALM3A6NDB9 673 aaPredicted RBP16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 HLA-DOAP06340 250 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 EVX2Q03828 476 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 NR5A1Q13285 461 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 SHC4Q6S5L8 630 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 FBXW7Q969H0 707 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 DNAJC25Q9H1X3 360 aa16.94■□□□□ 0.3
ECHDC1-220ENST00000528402 USP40Q9NVE5 1235 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms