RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZMYM1Q5SVZ6 1142 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 POTEEQ6S8J3 1075 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 SIAH1Q8IUQ4 282 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 PLEKHM2Q8IWE5 1019 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 RILPL2Q969X0 211 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 TXNRD2Q9NNW7 524 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 SRRDQ9UH36 339 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 PNMA3Q9UL41 463 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 TAOK2Q9UL54 1235 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 HTTP42858 3142 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 ATAD5Q96QE3 1844 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 PTPRFP10586 1907 aa13.78□□□□□ -0.2
VCAN-212ENST00000515397 BAZ2AQ9UIF9 1905 aaKnown RBP13.78□□□□□ -0.2
VCAN-212ENST00000515397 KIAA0100Q14667 2235 aaKnown RBP13.78□□□□□ -0.2
VCAN-212ENST00000515397 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 PATL2C9JE40 543 aaKnown RBP13.77□□□□□ -0.21
VCAN-212ENST00000515397 PRDM1O75626 825 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 TDO2P48775 406 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 FCGRTP55899 365 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 PABPC4Q13310 644 aaKnown RBP eCLIP13.77□□□□□ -0.21
VCAN-212ENST00000515397 Q3C1V9 767 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 SLC9C1Q4G0N8 1177 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 C16orf86Q6ZW13 317 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 AMOTL1Q8IY63 956 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 IFNL3Q8IZI9 196 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 FAM227BQ96M60 508 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 PAGR1Q9BTK6 254 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 INCENPQ9NQS7 918 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 SWAP70Q9UH65 585 aa13.77□□□□□ -0.21
VCAN-212ENST00000515397 NAV1Q8NEY1 1877 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 MYPNQ86TC9 1320 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 HOXA7P31268 230 aaPredicted RBP13.76□□□□□ -0.21
VCAN-212ENST00000515397 RGS19P49795 217 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 HERVK_113P62684 666 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 MLLT1Q03111 559 aaPredicted RBP13.76□□□□□ -0.21
VCAN-212ENST00000515397 VPS53Q5VIR6 699 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 SAMD1Q6SPF0 538 aaPredicted RBP13.76□□□□□ -0.21
VCAN-212ENST00000515397 SPICE1Q8N0Z3 855 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 RAET1EQ8TD07 263 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 EVI5LQ96CN4 794 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 KIAA1683Q9H0B3 1180 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 RBPJLQ9UBG7 517 aa13.76□□□□□ -0.21
VCAN-212ENST00000515397 CENPFP49454 3210 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 TNPO2O14787 897 aaKnown RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 FOXP2O15409 715 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 RAD21O60216 631 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 VCAM1P19320 739 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 EN2P19622 333 aaPredicted RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 HOXD10P28358 340 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 FLT3LGP49771 235 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 MTFR1Q15390 333 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 LRRFIP1Q32MZ4 808 aaKnown RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 SBK1Q52WX2 424 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 TMEM179Q6ZVK1 233 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 ARMC5Q96C12 935 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.75□□□□□ -0.21
VCAN-212ENST00000515397 RPAP3Q9H6T3 665 aaPredicted RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 MKNK2Q9HBH9 465 aa13.75□□□□□ -0.21
VCAN-212ENST00000515397 ARPP21Q9UBL0 812 aaPredicted RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 BIN2Q9UBW5 565 aaPredicted RBP13.75□□□□□ -0.21
VCAN-212ENST00000515397 MYH7P12883 1935 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 DDX60LQ5H9U9 1706 aaKnown RBP13.74□□□□□ -0.21
VCAN-212ENST00000515397 A0A0D9SFI3 127 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L15C9J2P7 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L13C9JLJ4 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L11C9JVI0 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L18D6R9N7 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L22D6RA61 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L17D6RBQ6 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L19D6RCP7 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L20D6RJB6 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 EEF2P13639 858 aaKnown RBP13.74□□□□□ -0.21
VCAN-212ENST00000515397 ELNP15502 786 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 GNAT2P19087 354 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 RASA1P20936 1047 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 PDE4AP27815 886 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 GCLCP48506 637 aaPredicted RBP13.74□□□□□ -0.21
VCAN-212ENST00000515397 ICA1Q05084 483 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 USP17L24Q0WX57 530 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 NMIQ13287 307 aaPredicted RBP13.74□□□□□ -0.21
VCAN-212ENST00000515397 FAM110CQ1W6H9 321 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 GIMAP6Q6P9H5 292 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 CATSPERGQ6ZRH7 1159 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 CHMP4CQ96CF2 233 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 ZNF333Q96JL9 665 aa13.74□□□□□ -0.21
VCAN-212ENST00000515397 GNRH1P01148 92 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 GRK4P32298 578 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 USP14P54578 494 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 CTDSPL2Q05D32 466 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 FAM47AQ5JRC9 791 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 NBPF11Q86T75 865 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 GPRC5AQ8NFJ5 357 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 C12orf42Q96LP6 360 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 CCDC17Q96LX7 622 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 NAPBQ9H115 298 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 PORCNQ9H237 461 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 TACC3Q9Y6A5 838 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 DOCK3Q8IZD9 2030 aa13.73□□□□□ -0.21
VCAN-212ENST00000515397 ADCY3O60266 1144 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 CNMDO75829 334 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms