RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 C1orf53Q5VUE5 145 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 DZIP1Q86YF9 867 aaKnown RBP13.14□□□□□ -0.31
NEDD9-215ENST00000514660 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.14□□□□□ -0.31
NEDD9-215ENST00000514660 AS3MTQ9HBK9 375 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 TMOD4Q9NZQ9 345 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 MUC6Q6W4X9 2439 aa13.14□□□□□ -0.31
NEDD9-215ENST00000514660 PIEZO1Q92508 2521 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 USP17L10C9JJH3 530 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 SEMA3EO15041 775 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 MYCNP04198 464 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-215ENST00000514660 KCNQ1P51787 676 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 PI16Q6UXB8 463 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 SIL1Q9H173 461 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 RABGAP1Q9Y3P9 1069 aa13.13□□□□□ -0.31
NEDD9-215ENST00000514660 ARIH1Q9Y4X5 557 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-215ENST00000514660 ZNF236Q9UL36 1845 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 C19orf81C9J6K1 198 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 COBLO75128 1261 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 CLTBP09497 229 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 RASIP1Q5U651 963 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 WDR78Q5VTH9 848 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 TBC1D9Q6ZT07 1266 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 ALYREFQ86V81 257 aaKnown RBP13.12□□□□□ -0.31
NEDD9-215ENST00000514660 CCAR1Q8IX12 1150 aaKnown RBP13.12□□□□□ -0.31
NEDD9-215ENST00000514660 ARRDC4Q8NCT1 418 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 C1QTNF1Q9BXJ1 281 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 ZBTB21Q9ULJ3 1066 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 TACC3Q9Y6A5 838 aa13.12□□□□□ -0.31
NEDD9-215ENST00000514660 KBTBD13C9JR72 458 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 SEPT4O43236 478 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 ASNSP08243 561 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 TIMM10P62072 90 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 FPGSQ05932 587 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 FAAP100Q0VG06 881 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 METTL16Q86W50 562 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 SH3RF3Q8TEJ3 882 aaPredicted RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 NSUN4Q96CB9 384 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 GAS2L1Q99501 681 aaPredicted RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 GNL3LQ9NVN8 582 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 HERC5Q9UII4 1024 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 PHF24Q9UPV7 400 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 PA2G4Q9UQ80 394 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 ZNFX1Q9P2E3 1918 aaKnown RBP13.11□□□□□ -0.31
NEDD9-215ENST00000514660 FOCADQ5VW36 1801 aa13.11□□□□□ -0.31
NEDD9-215ENST00000514660 ZNF316A6NFI3 1004 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 PQBP1O60828 265 aaKnown RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 RAG1P15918 1043 aa13.1□□□□□ -0.31
NEDD9-215ENST00000514660 ZYXQ15942 572 aaKnown RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 TMEM240Q5SV17 173 aa13.1□□□□□ -0.31
NEDD9-215ENST00000514660 C12orf42Q96LP6 360 aa13.1□□□□□ -0.31
NEDD9-215ENST00000514660 YBX2Q9Y2T7 364 aaKnown RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 SALL2Q9Y467 1007 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 MYO5AQ9Y4I1 1855 aaKnown RBP13.1□□□□□ -0.31
NEDD9-215ENST00000514660 PRRC2BQ5JSZ5 2229 aaKnown RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 XIRP2A4UGR9 3374 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 FAM86C2PA6NEL3 165 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 SPDYE16A6NNV3 312 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 IGFBP4P22692 258 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 OLFML2BQ68BL8 750 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 USP17L2Q6R6M4 530 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 CATSPERGQ6ZRH7 1159 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 ZGPATQ8N5A5 531 aaKnown RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 LENG1Q96BZ8 264 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 CXXC1Q9P0U4 656 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 CEP126Q9P2H0 1117 aa13.09□□□□□ -0.31
NEDD9-215ENST00000514660 PDS5AQ29RF7 1337 aaKnown RBP13.09□□□□□ -0.31
NEDD9-215ENST00000514660 CIAO1O76071 339 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 PGK1P00558 417 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 ADORA2AP29274 412 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 IRX5P78411 483 aaPredicted RBP13.08□□□□□ -0.32
NEDD9-215ENST00000514660 LBX2Q6XYB7 198 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 ERICH6Q7L0X2 663 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 ADGRA1Q86SQ6 560 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 TEX11Q8IYF3 940 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 ACER1Q8TDN7 264 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 GTF3C2Q8WUA4 911 aaPredicted RBP13.08□□□□□ -0.32
NEDD9-215ENST00000514660 SNX27Q96L92 541 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 MOV10L1Q9BXT6 1211 aaKnown RBP13.08□□□□□ -0.32
NEDD9-215ENST00000514660 NKX2-4Q9H2Z4 354 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 HMG20BQ9P0W2 317 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 PI4KBQ9UBF8 816 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 TBX21Q9UL17 535 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 PALD1Q9ULE6 856 aa13.08□□□□□ -0.32
NEDD9-215ENST00000514660 A0A1W2PQ45 241 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-215ENST00000514660 A0A1W2PQY0 241 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L15C9J2P7 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L13C9JLJ4 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L11C9JVI0 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L18D6R9N7 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L22D6RA61 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L17D6RBQ6 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L19D6RCP7 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L20D6RJB6 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 ACRP10323 421 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 TAL1P17542 331 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-215ENST00000514660 VCAM1P19320 739 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 USP17L24Q0WX57 530 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 MAPKAPK5Q8IW41 473 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 SLF2Q8IX21 1173 aa13.07□□□□□ -0.32
NEDD9-215ENST00000514660 CWC22Q9HCG8 908 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms