RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 LRRIQ3A6PVS8 624 aaPredicted RBP20.1■□□□□ 0.81
NUP54-205ENST00000507257 PPP1R3GB7ZBB8 358 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 PRPF6O94906 941 aaKnown RBP20.1■□□□□ 0.81
NUP54-205ENST00000507257 CSF1RP07333 972 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 MCAMP43121 646 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 USP14P54578 494 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 ERVK-24P63145 666 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 GRAMD1CQ8IYS0 662 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 CDC5LQ99459 802 aaKnown RBP20.1■□□□□ 0.81
NUP54-205ENST00000507257 CSRNP2Q9H175 543 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 PCDHB6Q9Y5E3 794 aa20.1■□□□□ 0.81
NUP54-205ENST00000507257 CCDC196A0A1B0GTZ2 297 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 PSMD14O00487 310 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 CD44P16070 742 aaKnown RBP20.09■□□□□ 0.81
NUP54-205ENST00000507257 DPYDQ12882 1025 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 HSP90AB3PQ58FF7 597 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 TRAPPC11Q7Z392 1133 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 FAM204AQ9H8W3 233 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 ADAMTSL3P82987 1691 aa20.09■□□□□ 0.81
NUP54-205ENST00000507257 EFCAB13Q8IY85 973 aa20.08■□□□□ 0.81
NUP54-205ENST00000507257 NOA1Q8NC60 698 aaKnown RBP20.08■□□□□ 0.81
NUP54-205ENST00000507257 ACRBPQ8NEB7 543 aa20.08■□□□□ 0.81
NUP54-205ENST00000507257 AFAP1L1Q8TED9 768 aa20.08■□□□□ 0.81
NUP54-205ENST00000507257 KRT23Q9C075 422 aa20.08■□□□□ 0.81
NUP54-205ENST00000507257 COL22A1Q8NFW1 1626 aaPredicted RBP20.08■□□□□ 0.81
NUP54-205ENST00000507257 FERMT2Q96AC1 680 aa20.08■□□□□ 0.8
NUP54-205ENST00000507257 PAGE5Q96GU1 130 aa20.08■□□□□ 0.8
NUP54-205ENST00000507257 ORAI2Q96SN7 254 aa20.08■□□□□ 0.8
NUP54-205ENST00000507257 KCPQ6ZWJ8 1503 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 IFIT3O14879 490 aaKnown RBP20.07■□□□□ 0.8
NUP54-205ENST00000507257 RNF40O75150 1001 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 SYF2O95926 243 aaKnown RBP20.07■□□□□ 0.8
NUP54-205ENST00000507257 PPP2R5BQ15173 497 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 RTN1Q16799 776 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 ANKLE2Q86XL3 938 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 TMTC2Q8N394 836 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 CRACR2BQ8N4Y2 399 aaPredicted RBP20.07■□□□□ 0.8
NUP54-205ENST00000507257 CPLX3Q8WVH0 158 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 STRBPQ96SI9 672 aaKnown RBP20.07■□□□□ 0.8
NUP54-205ENST00000507257 HAUS4Q9H6D7 363 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 ZSWIM5Q9P217 1185 aa20.07■□□□□ 0.8
NUP54-205ENST00000507257 ZC3H4Q9UPT8 1303 aaKnown RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 TCRBV5S4A2TA0A5A2 114 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 SHOX2O60902 331 aaPredicted RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 GUCY1A2P33402 732 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 FOXR1Q6PIV2 292 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 KRT28Q7Z3Y7 464 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 MYH6P13533 1939 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 PCCAP05165 728 aaPredicted RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 SF3B2Q13435 895 aaKnown RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 PAPD7Q5XG87 772 aaKnown RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 WWC2Q6AWC2 1192 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 PI16Q6UXB8 463 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 USP49Q70CQ1 688 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 PYM1Q9BRP8 204 aaKnown RBP20.06■□□□□ 0.8
NUP54-205ENST00000507257 RWDD2AQ9UIY3 292 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 HPCAL4Q9UM19 191 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 KCNJ14Q9UNX9 436 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 RIPOR2Q9Y4F9 1068 aa20.06■□□□□ 0.8
NUP54-205ENST00000507257 DOCK2Q92608 1830 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 ZNF532Q9HCE3 1301 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 TRIM75PA6NK02 468 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 UBE2Q2LH0YL09 131 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 PDE6AP16499 860 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 EIF5P55010 431 aaKnown RBP20.05■□□□□ 0.8
NUP54-205ENST00000507257 KRT31Q15323 416 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 DNAJC21Q5F1R6 531 aaKnown RBP20.05■□□□□ 0.8
NUP54-205ENST00000507257 PACS2Q86VP3 889 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 ANKRD20A12PQ8NF67 263 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 COG1Q8WTW3 980 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 MYL10Q9BUA6 226 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 DISP2A7MBM2 1401 aa20.05■□□□□ 0.8
NUP54-205ENST00000507257 PATL2C9JE40 543 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 APPP05067 770 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 CKAP4Q07065 602 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 IFIT5Q13325 482 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 TCIRG1Q13488 830 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 AKNAD1Q5T1N1 836 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 SUGP1Q8IWZ8 645 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 EHBP1Q8NDI1 1231 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 RUBCNQ92622 972 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 EPN1Q9Y6I3 576 aaPredicted RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 ARAP2Q8WZ64 1704 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 A0A087WUV0 522 aaPredicted RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 A0A087X0B3 334 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 ARID4AP29374 1257 aaPredicted RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 COPB1P53618 953 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 STX17P56962 302 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 NR5A1Q13285 461 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 SART3Q15020 963 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 KLHL10Q6JEL2 608 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 RNF26Q9BY78 433 aaPredicted RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 PIH1D3Q9NQM4 214 aaKnown RBP20.04■□□□□ 0.8
NUP54-205ENST00000507257 JRKLQ9Y4A0 524 aa20.04■□□□□ 0.8
NUP54-205ENST00000507257 N4BP3O15049 544 aa20.03■□□□□ 0.8
NUP54-205ENST00000507257 NDUFA10O95299 355 aa20.03■□□□□ 0.8
NUP54-205ENST00000507257 UQCRFS1P1P0C7P4 283 aa20.03■□□□□ 0.8
NUP54-205ENST00000507257 GUCY2CP25092 1073 aa20.03■□□□□ 0.8
NUP54-205ENST00000507257 IRX3P78415 501 aaPredicted RBP20.03■□□□□ 0.8
NUP54-205ENST00000507257 TAF7LQ5H9L4 462 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms