RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 SPDYE5A6NIY4 337 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 RASSF10A6NK89 507 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 FGRP09769 529 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 PSMA5P28066 241 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 NT5C2P49902 561 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 JAG1P78504 1218 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 FGD1P98174 961 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 SPP2Q13103 211 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 MKRN4PQ13434 485 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 SART3Q15020 963 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 ZYXQ15942 572 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 SHROOM1Q2M3G4 852 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 CCDC178Q5BJE1 867 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 SPRYD7Q5W111 196 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 RASAL3Q86YV0 1011 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 ZNF280CQ8ND82 737 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 NEDD1Q8NHV4 660 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 WNK4Q96J92 1243 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 CAPNS2Q96L46 248 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 NEK1Q96PY6 1258 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 ZKSCAN3Q9BRR0 538 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 UBAC1Q9BSL1 405 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 CLIP2Q9UDT6 1046 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 STX8Q9UNK0 236 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 SSUH2Q9Y2M2 353 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 TACC3Q9Y6A5 838 aa9.68□□□□□ -0.86
LIMCH1-206ENST00000505705 WDR33Q9C0J8 1336 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 USP17L10C9JJH3 530 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 IRF6O14896 467 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 TTLL1O95922 423 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SLC10A3P09131 477 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 HMGB1P09429 215 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 ZBTB48P10074 688 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 EEF2P13639 858 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 GUCY1A2P33402 732 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 GTF2A2P52657 109 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 USP14P54578 494 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 PPIL2Q13356 520 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SNAPC2Q13487 334 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 GADL1Q6ZQY3 521 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 CHST3Q7LGC8 479 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 RASEFQ8IZ41 740 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SPDYE1Q8NFV5 336 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 CEP95Q96GE4 821 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 JAKMIP1Q96N16 626 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 BACH2Q9BYV9 841 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 C22orf23Q9BZE7 217 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SH2D4AQ9H788 454 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 TMOD4Q9NZQ9 345 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 ZSWIM5Q9P217 1185 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 ISY1Q9ULR0 285 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 AFG3L2Q9Y4W6 797 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SNX14Q9Y5W7 946 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 TAF6LQ9Y6J9 622 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 SIPA1L1O43166 1804 aa9.67□□□□□ -0.86
LIMCH1-206ENST00000505705 C19orf81C9J6K1 198 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 CXCL11O14625 94 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 IFIT3O14879 490 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 NMT2O60551 498 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 AOC2O75106 756 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 CETPP11597 493 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 CASTP20810 708 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 MCM5P33992 734 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 VEGFBP49765 207 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 NOGQ13253 232 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 MTMR2Q13614 643 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 ADCK5Q3MIX3 580 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 TSGA10IPQ3SY00 556 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 BLOC1S2Q6QNY1 142 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 USP17L2Q6R6M4 530 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 STOX1Q6ZVD7 989 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 CLEC10AQ8IUN9 316 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 ZSCAN10Q96SZ4 725 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 WDR18Q9BV38 432 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 KAT14Q9H8E8 782 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 TCP11L1Q9NUJ3 509 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 MTMR4Q9NYA4 1195 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 NYAP2Q9P242 653 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 MTMR7Q9Y216 660 aa9.66□□□□□ -0.86
LIMCH1-206ENST00000505705 TNKSO95271 1327 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 MYH8P13535 1937 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 CCL15-CCL14A0A0B4J2E2 113 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 MANSC4A6NHS7 340 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 PRC1O43663 620 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 GJA5P36382 358 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 HMGCS2P54868 508 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 BACE1P56817 501 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 INHBEP58166 350 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 KIF23Q02241 960 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 SREBF2Q12772 1141 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 WTAPQ15007 396 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 CCL15Q16663 113 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 TMEM67Q5HYA8 995 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 IFIT1BQ5T764 474 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 OTUD7BQ6GQQ9 843 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 NFXL1Q6ZNB6 911 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 CYB5R4Q7L1T6 521 aa9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 DHX32Q7L7V1 743 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 FASTKD5Q7L8L6 764 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-206ENST00000505705 DGKHQ86XP1 1220 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms