RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ECE1	P42892	770 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	PHKA2	P46019	1235 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	TYRO3	Q06418	890 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	BMS1	Q14692	1282 aa	Known RBP	5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	TCEAL1	Q15170	157 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	HIF1A	Q16665	826 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	CTC1	Q2NKJ3	1217 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	ANKRD13A	Q8IZ07	590 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	CMTR1	Q8N1G2	835 aa	Known RBP	5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	SLC17A8	Q8NDX2	589 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	TTC16	Q8NEE8	873 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	GPATCH3	Q96I76	525 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	TRIM56	Q9BRZ2	755 aa	Known RBP	5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	NOC4L	Q9BVI4	516 aa	Known RBP	5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	TAOK3	Q9H2K8	898 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	SUV39H2	Q9H5I1	410 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	ZNF277	Q9NRM2	450 aa	Predicted RBP	5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	THSD7B	Q9C0I4	1608 aa		5.72	□□□□□ -1.49
VPS52-222	ENST00000495981	COL15A1	P39059	1388 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	KDM3B	Q7LBC6	1761 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	ADAMTSL1	Q8N6G6	1762 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	FAM155A	B1AL88	458 aa	Predicted RBP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	ERVV-2	B6SEH9	535 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981		H0YIN7	160 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	CA12	O43570	354 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	CTSO	P43234	321 aa	Predicted RBP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	SOGA3	Q5TF21	947 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	LRRC69	Q6ZNQ3	347 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	VPS37D	Q86XT2	251 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	SNIP1	Q8TAD8	396 aa	Known RBP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	GCC1	Q96CN9	775 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	SPACA7	Q96KW9	195 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	LATS2	Q9NRM7	1088 aa		5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981	SOS1	Q07889	1333 aa	Predicted RBP	5.71	□□□□□ -1.5
VPS52-222	ENST00000495981		F6X3S4	739 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	CELF2	O95319	508 aa	Known RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	EGFR	P00533	1210 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	SMPD1	P17405	629 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	IL13	P35225	146 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	TNNT2	P45379	298 aa	Predicted RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	POU4F2	Q12837	409 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	FOXC1	Q12948	553 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	ZNF697	Q5TEC3	545 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	KIAA0319	Q5VV43	1072 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	NBPF10	Q6P3W6	841 aa	Known RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	ZNF530	Q6P9A1	599 aa	Predicted RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	BICDL1	Q6ZP65	573 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	SYNE4	Q8N205	404 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	SEC16B	Q96JE7	1060 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	RSRP1	Q9BUV0	290 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	GLIS2	Q9BZE0	524 aa	Predicted RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	ZNF408	Q9H9D4	720 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	RNF186	Q9NXI6	227 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	FNDC3A	Q9Y2H6	1198 aa	Known RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	MRPL42	Q9Y6G3	142 aa	Known RBP	5.7	□□□□□ -1.5
VPS52-222	ENST00000495981	CCDC88A	Q3V6T2	1871 aa		5.7	□□□□□ -1.5
VPS52-222	ENST00000495981		A0A1W2PP55	124 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	FZD9	O00144	591 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	XYLB	O75191	536 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	GADD45B	O75293	160 aa	Predicted RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	TRPA1	O75762	1119 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	CYP2E1	P05181	493 aa	Predicted RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	HSP90AB1	P08238	724 aa	Known RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	HSPA5	P11021	654 aa	Known RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	GART	P22102	1010 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	GTF2E1	P29083	439 aa	Predicted RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	PRPF40B	Q6NWY9	871 aa	Known RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	ZNF598	Q86UK7	904 aa	Known RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	PNMA8A	Q86V59	439 aa	Predicted RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	RNF217	Q8TC41	542 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	EAF1	Q96JC9	268 aa	Predicted RBP	5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	SPON2	Q9BUD6	331 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	NEUROD4	Q9HD90	331 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	KCNQ5	Q9NR82	932 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	TOR4A	Q9NXH8	423 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	ANKIB1	Q9P2G1	1089 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	COL4A5	P29400	1685 aa		5.69	□□□□□ -1.5
VPS52-222	ENST00000495981	SNED1	Q8TER0	1413 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	GDF9	O60383	454 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	MSX1	P28360	303 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	GSTT1	P30711	240 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	NASP	P49321	788 aa	Predicted RBP	5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	KIF23	Q02241	960 aa	Predicted RBP	5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	AMOT	Q4VCS5	1084 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	TBC1D9B	Q66K14	1250 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	PRR5L	Q6MZQ0	368 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	CTU1	Q7Z7A3	348 aa	Known RBP	5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	KIAA0825	Q8IV33	1275 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	DNAJC10	Q8IXB1	793 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	RHOV	Q96L33	236 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	PANK3	Q9H999	370 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	GINM1	Q9NU53	330 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	ABI2	Q9NYB9	513 aa	Predicted RBP	5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	NARF	Q9UHQ1	456 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	KIF7	Q2M1P5	1343 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	PITPNM2	Q9BZ72	1349 aa		5.68	□□□□□ -1.5
VPS52-222	ENST00000495981	CEMIP	Q8WUJ3	1361 aa		5.67	□□□□□ -1.5
VPS52-222	ENST00000495981	NPC1L1	Q9UHC9	1359 aa		5.67	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms