RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 CD163Q86VB7 1156 aa7.14□□□□□ -1.27
PTCD3-219ENST00000494323 AMIGO3Q86WK7 504 aa7.14□□□□□ -1.27
PTCD3-219ENST00000494323 EPS8L3Q8TE67 593 aaKnown RBP7.14□□□□□ -1.27
PTCD3-219ENST00000494323 ZNF526Q8TF50 670 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-219ENST00000494323 TONSLQ96HA7 1378 aa7.14□□□□□ -1.27
PTCD3-219ENST00000494323 NPHS2Q9NP85 383 aa7.14□□□□□ -1.27
PTCD3-219ENST00000494323 SLC6A14Q9UN76 642 aa7.14□□□□□ -1.27
PTCD3-219ENST00000494323 MEGF6O75095 1541 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 CYP27B1O15528 508 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 LILRB5O75023 590 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 GADD45BO75293 160 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-219ENST00000494323 GHRHP01286 108 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 DAB2P98082 770 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 MLLT1Q03111 559 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-219ENST00000494323 PSMD2Q13200 908 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 COL13A1Q5TAT6 717 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-219ENST00000494323 FAM35AQ86V20 835 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 CEP120Q8N960 986 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 MRS2Q9HD23 443 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 TUBGCP6Q96RT7 1819 aa7.13□□□□□ -1.27
PTCD3-219ENST00000494323 USP54Q70EL1 1684 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 A0A1W2PP55 124 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 EIF2AK2P19525 551 aaKnown RBP7.12□□□□□ -1.27
PTCD3-219ENST00000494323 PEAR1Q5VY43 1037 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-219ENST00000494323 C20orf204Q6ZNR8 217 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 PIGBQ92521 554 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 SRCIN1Q9C0H9 1055 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 JPH1Q9HDC5 661 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-219ENST00000494323 CD2APQ9Y5K6 639 aa7.12□□□□□ -1.27
PTCD3-219ENST00000494323 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-219ENST00000494323 CGNL1Q0VF96 1302 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 LY75O60449 1722 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 DOT1LQ8TEK3 1739 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 J3QW42 95 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 SORBS3O60504 671 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 ADAM23O75077 832 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 NID1P14543 1247 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 TMF1P82094 1093 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 TRIM28Q13263 835 aaKnown RBP7.11□□□□□ -1.27
PTCD3-219ENST00000494323 COL9A3Q14050 684 aaPredicted RBP7.11□□□□□ -1.27
PTCD3-219ENST00000494323 HFE2Q6ZVN8 426 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 FLAD1Q8NFF5 587 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 FAM161BQ96MY7 647 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 OSMRQ99650 979 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 EHD4Q9H223 541 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 LATS2Q9NRM7 1088 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 DZANK1Q9NVP4 752 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 PPP4R2Q9NY27 417 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 FRRS1LQ9P0K9 344 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 AK5Q9Y6K8 562 aa7.11□□□□□ -1.27
PTCD3-219ENST00000494323 QSER1Q2KHR3 1735 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PALLDQ8WX93 1383 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 FAM208AQ9UK61 1670 aaKnown RBP7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PCDH11XQ9BZA7 1347 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PCDH11YQ9BZA8 1340 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 FAM229AH3BQW9 127 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 CPB1P15086 417 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 EIF4BP23588 611 aaKnown RBP7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PSAPL1Q6NUJ1 521 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 ELMSAN1Q6PJG2 1045 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PI16Q6UXB8 463 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 NUDT8Q8WV74 236 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 SMARCC1Q92922 1105 aaPredicted RBP7.1□□□□□ -1.27
PTCD3-219ENST00000494323 ZKSCAN3Q9BRR0 538 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 PBX4Q9BYU1 374 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 BCO2Q9BYV7 579 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 BACH2Q9BYV9 841 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 C12orf49Q9H741 205 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 ASAP1Q9ULH1 1129 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 CEP350Q5VT06 3117 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 COL24A1Q17RW2 1714 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 SHANK3Q9BYB0 1731 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 ATP10DQ9P241 1426 aa7.1□□□□□ -1.27
PTCD3-219ENST00000494323 INSRP06213 1382 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 IGSF1Q8N6C5 1336 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 K7ELQ4 463 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 SMNDC1O75940 238 aaKnown RBP eCLIP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 TNNT2P45379 298 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 GRM2Q14416 872 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 TSNAXIP1Q2TAA8 658 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 PERM1Q5SV97 790 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 TRAPPC3LQ5T215 181 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 PRPF40BQ6NWY9 871 aaKnown RBP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 TMEM102Q8N9M5 508 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 LINC00116Q8NCU8 138 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 PLD4Q96BZ4 506 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 BHLHE41Q9C0J9 482 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-219ENST00000494323 RASSF4Q9H2L5 321 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 LIN7BQ9HAP6 207 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 VTI1BQ9UEU0 232 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 NAGPAQ9UK23 515 aa7.09□□□□□ -1.27
PTCD3-219ENST00000494323 SMG6Q86US8 1419 aaKnown RBP7.09□□□□□ -1.28
PTCD3-219ENST00000494323 A0A0G2JLW4 131 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 PDE2AO00408 941 aaPredicted RBP7.08□□□□□ -1.28
PTCD3-219ENST00000494323 RGS9O75916 674 aaPredicted RBP7.08□□□□□ -1.28
PTCD3-219ENST00000494323 FURINP09958 794 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 HMGB2P26583 209 aaKnown RBP7.08□□□□□ -1.28
PTCD3-219ENST00000494323 GATA4P43694 442 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 ITPK1Q13572 414 aa7.08□□□□□ -1.28
PTCD3-219ENST00000494323 XP32Q5T750 250 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms