RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 FOSBP53539 338 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 TERF1P54274 439 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 CEBPZQ03701 1054 aaKnown RBP12.39□□□□□ -0.43
USP4-214ENST00000491791 CHAF1AQ13111 956 aaPredicted RBP12.39□□□□□ -0.43
USP4-214ENST00000491791 PKN1Q16512 942 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 RESP18Q5W5W9 173 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 RCSD1Q6JBY9 416 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 TMTC3Q6ZXV5 915 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 C2CD5Q86YS7 1000 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 SLF2Q8IX21 1173 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 CCDC24Q8N4L8 307 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 ZKSCAN3Q9BRR0 538 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 PHF20Q9BVI0 1012 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 RTFDC1Q9BY42 306 aaPredicted RBP12.39□□□□□ -0.43
USP4-214ENST00000491791 RTN4Q9NQC3 1192 aaKnown RBP12.39□□□□□ -0.43
USP4-214ENST00000491791 TOMM22Q9NS69 142 aa12.39□□□□□ -0.43
USP4-214ENST00000491791 ANKRD31Q8N7Z5 1873 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 WDR90Q96KV7 1748 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 NPHP1O15259 732 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 AP5Z1O43299 807 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 PPFIA3O75145 1194 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 OFD1O75665 1012 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 GUCY1A2P33402 732 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 NOVP48745 357 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 TOB1P50616 345 aaPredicted RBP12.38□□□□□ -0.43
USP4-214ENST00000491791 PLA2G4DQ86XP0 818 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 DIS3L2Q8IYB7 885 aaKnown RBP12.38□□□□□ -0.43
USP4-214ENST00000491791 TBC1D16Q8TBP0 767 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 KIAA1468Q9P260 1216 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 TUBE1Q9UJT0 475 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 ATP6V0A2Q9Y487 856 aa12.38□□□□□ -0.43
USP4-214ENST00000491791 CYP2D7A0A087X1C5 515 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 GLTPD2A6NH11 291 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 BTBD18B2RXH4 712 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 SMIM22K7EJ46 135 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 ZNF202O95125 648 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 BMP15O95972 392 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 VEGFAP15692 232 aaPredicted RBP12.37□□□□□ -0.43
USP4-214ENST00000491791 PFKFB1P16118 471 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 PTPREP23469 700 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 RASSF7Q02833 373 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 CCDC144CPQ8IYA2 1237 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 TNFRSF25Q93038 417 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 NAT10Q9H0A0 1025 aaKnown RBP12.37□□□□□ -0.43
USP4-214ENST00000491791 ZNF287Q9HBT7 754 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 SH3GLB2Q9NR46 395 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 TAOK2Q9UL54 1235 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 CEP131Q9UPN4 1083 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 NAV1Q8NEY1 1877 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 FOCADQ5VW36 1801 aa12.37□□□□□ -0.43
USP4-214ENST00000491791 CDK5RAP2Q96SN8 1893 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 A0A1B0GVL5 298 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 GOLGA6L6A8MZA4 724 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 UFL1O94874 794 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 SMARCA1P28370 1054 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 KIF5BP33176 963 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 PDE6BP35913 854 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 TRAPPC10P48553 1259 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 GNAQP50148 359 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 AKAP17AQ02040 695 aaKnown RBP12.36□□□□□ -0.43
USP4-214ENST00000491791 GNL2Q13823 731 aaKnown RBP12.36□□□□□ -0.43
USP4-214ENST00000491791 DPY19L2Q6NUT2 758 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 SHC4Q6S5L8 630 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 AMOTL1Q8IY63 956 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 KRI1Q8N9T8 703 aaKnown RBP12.36□□□□□ -0.43
USP4-214ENST00000491791 NUP133Q8WUM0 1156 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 MRFAP1L1Q96HT8 127 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 COA1Q9GZY4 146 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 DNAJC25Q9H1X3 360 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 POLLQ9UGP5 575 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 SRPRBQ9Y5M8 271 aaKnown RBP12.36□□□□□ -0.43
USP4-214ENST00000491791 MYH6P13533 1939 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 SBF1O95248 1867 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 CNTNAP5Q8WYK1 1306 aa12.36□□□□□ -0.43
USP4-214ENST00000491791 MYO1BO43795 1136 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 NPR1P16066 1061 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 ALDH1B1P30837 517 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 ZNF75DP51815 510 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 RHBDL3P58872 404 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 NLRP12P59046 1061 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 HTRA3P83110 453 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 NPY5RQ15761 445 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 LUZP1Q86V48 1076 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 CEP57L1Q8IYX8 460 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 STK11IPQ8N1F8 1099 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 CTCFLQ8NI51 663 aaPredicted RBP12.35□□□□□ -0.43
USP4-214ENST00000491791 SH3RF3Q8TEJ3 882 aaPredicted RBP12.35□□□□□ -0.43
USP4-214ENST00000491791 ZNF622Q969S3 477 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP4-214ENST00000491791 SHISA4Q96DD7 197 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 LZTS2Q9BRK4 669 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 SDF4Q9BRK5 362 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 MRIQ9BWK5 157 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 IL17RBQ9NRM6 502 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 MCM9Q9NXL9 1143 aa12.35□□□□□ -0.43
USP4-214ENST00000491791 FBXO2Q9UK22 296 aaPredicted RBP12.35□□□□□ -0.43
USP4-214ENST00000491791 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP4-214ENST00000491791 PLIN4Q96Q06 1357 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 UBE2Q2LH0YL09 131 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 PPEF1O14829 653 aaPredicted RBP12.34□□□□□ -0.43
USP4-214ENST00000491791 USP17L8P0C7I0 530 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms