RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SMCR8Q8TEV9 937 aaPredicted RBP21.74■■□□□ 1.07
COL9A3-214ENST00000490398 P2RX7Q99572 595 aaKnown RBP21.74■■□□□ 1.07
COL9A3-214ENST00000490398 MINDY4BA8MYZ0 360 aa21.73■■□□□ 1.07
COL9A3-214ENST00000490398 PATL2C9JE40 543 aaKnown RBP21.73■■□□□ 1.07
COL9A3-214ENST00000490398 OSBPP22059 807 aa21.73■■□□□ 1.07
COL9A3-214ENST00000490398 USP17L2Q6R6M4 530 aa21.73■■□□□ 1.07
COL9A3-214ENST00000490398 IFNL3Q8IZI9 196 aa21.73■■□□□ 1.07
COL9A3-214ENST00000490398 FAM227BQ96M60 508 aa21.73■■□□□ 1.07
COL9A3-214ENST00000490398 ARPP21Q9UBL0 812 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-214ENST00000490398 FMNL1O95466 1100 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-214ENST00000490398 HOXA7P31268 230 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-214ENST00000490398 KIF22Q14807 665 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 KIAA1755Q5JYT7 1200 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 VPS53Q5VIR6 699 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 GIMAP6Q6P9H5 292 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 DDRGK1Q96HY6 314 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 C12orf42Q96LP6 360 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 FEZ1Q99689 392 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.72■■□□□ 1.07
COL9A3-214ENST00000490398 PNMA3Q9UL41 463 aa21.72■■□□□ 1.07
COL9A3-214ENST00000490398 A0A0D9SFI3 127 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 APPP05067 770 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 TDO2P48775 406 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 LRRFIP1Q32MZ4 808 aaKnown RBP21.71■■□□□ 1.07
COL9A3-214ENST00000490398 KIAA1683Q9H0B3 1180 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 OSBPL3Q9H4L5 887 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 GABRQQ9UN88 632 aa21.71■■□□□ 1.07
COL9A3-214ENST00000490398 TRIM6-TRIM34B2RNG4 842 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 GNAT2P19087 354 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 PABPC4Q13310 644 aaKnown RBP eCLIP21.7■■□□□ 1.06
COL9A3-214ENST00000490398 TMEM179Q6ZVK1 233 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 AMOTL1Q8IY63 956 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 TXNRD2Q9NNW7 524 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 SRRDQ9UH36 339 aa21.7■■□□□ 1.06
COL9A3-214ENST00000490398 VCAM1P19320 739 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 RASA1P20936 1047 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 HERVK_113P62684 666 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 IRX3P78415 501 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-214ENST00000490398 NMIQ13287 307 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-214ENST00000490398 SH3TC2Q8TF17 1288 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 RILPL2Q969X0 211 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 ROBO3Q96MS0 1386 aa21.69■■□□□ 1.06
COL9A3-214ENST00000490398 PRDM1O75626 825 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 PRKCZQ05513 592 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 ARHGEF6Q15052 776 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 FAM110CQ1W6H9 321 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 ARMC5Q96C12 935 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 RBPJLQ9UBG7 517 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 TACC3Q9Y6A5 838 aa21.68■■□□□ 1.06
COL9A3-214ENST00000490398 MYPNQ86TC9 1320 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 RGS19P49795 217 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 USP14P54578 494 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 FCGRTP55899 365 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 ZNF589Q86UQ0 364 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-214ENST00000490398 CCDC17Q96LX7 622 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 TAOK2Q9UL54 1235 aa21.67■■□□□ 1.06
COL9A3-214ENST00000490398 GCLCP48506 637 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-214ENST00000490398 ICA1Q05084 483 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 Q3C1V9 767 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 CATSPERGQ6ZRH7 1159 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 RPAP3Q9H6T3 665 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-214ENST00000490398 INCENPQ9NQS7 918 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 HELLSQ9NRZ9 838 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 MORF4L1Q9UBU8 362 aa21.66■■□□□ 1.06
COL9A3-214ENST00000490398 MKI67P46013 3256 aaKnown RBP21.65■■□□□ 1.06
COL9A3-214ENST00000490398 TNRC18O15417 2968 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-214ENST00000490398 POTEFA5A3E0 1075 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L15C9J2P7 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L13C9JLJ4 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L11C9JVI0 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L18D6R9N7 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L22D6RA61 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L17D6RBQ6 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L19D6RCP7 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L20D6RJB6 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 CNMDO75829 334 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 MYCP01106 439 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-214ENST00000490398 GNRH1P01148 92 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 EEF2P13639 858 aaKnown RBP21.65■■□□□ 1.06
COL9A3-214ENST00000490398 SDSP20132 328 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 USP17L24Q0WX57 530 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 ZNF333Q96JL9 665 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 NAPBQ9H115 298 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 MKNK2Q9HBH9 465 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 TMX2Q9Y320 296 aa21.65■■□□□ 1.06
COL9A3-214ENST00000490398 TNPO2O14787 897 aaKnown RBP21.64■■□□□ 1.05
COL9A3-214ENST00000490398 GSPT1P15170 499 aaKnown RBP21.64■■□□□ 1.05
COL9A3-214ENST00000490398 ATP2B2Q01814 1243 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 PPARAQ07869 468 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 SLC9C1Q4G0N8 1177 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 MCMDC2Q4G0Z9 681 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 SPICE1Q8N0Z3 855 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 PAGR1Q9BTK6 254 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 NACAP1Q9BZK3 213 aa21.64■■□□□ 1.05
COL9A3-214ENST00000490398 FLT3LGP49771 235 aa21.63■■□□□ 1.05
COL9A3-214ENST00000490398 PRMT2P55345 433 aa21.63■■□□□ 1.05
COL9A3-214ENST00000490398 CTDSPL2Q05D32 466 aa21.63■■□□□ 1.05
COL9A3-214ENST00000490398 IGKV6D-41A0A0C4DH26 115 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 FAM47AQ5JRC9 791 aa21.62■■□□□ 1.05
COL9A3-214ENST00000490398 RAET1EQ8TD07 263 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms