RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CABP5Q9NP86 173 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 TMOD4Q9NZQ9 345 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 ARPP21Q9UBL0 812 aaPredicted RBP16.67■□□□□ 0.26
SYNE1-226ENST00000488376 SWAP70Q9UH65 585 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 TRIM6-TRIM34B2RNG4 842 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 C19orf81C9J6K1 198 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 APPP05067 770 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 GIMAP6Q6P9H5 292 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 USP17L2Q6R6M4 530 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 IFNL3Q8IZI9 196 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 RILPL2Q969X0 211 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 DDRGK1Q96HY6 314 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 P2RX7Q99572 595 aaKnown RBP16.66■□□□□ 0.26
SYNE1-226ENST00000488376 FEZ1Q99689 392 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 KIAA1683Q9H0B3 1180 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 OSBPL3Q9H4L5 887 aa16.66■□□□□ 0.26
SYNE1-226ENST00000488376 ROBO3Q96MS0 1386 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 PATL2C9JE40 543 aaKnown RBP16.65■□□□□ 0.26
SYNE1-226ENST00000488376 RASA1P20936 1047 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 OSBPP22059 807 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 TDO2P48775 406 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 NMIQ13287 307 aaPredicted RBP16.65■□□□□ 0.26
SYNE1-226ENST00000488376 LRRFIP1Q32MZ4 808 aaKnown RBP16.65■□□□□ 0.26
SYNE1-226ENST00000488376 ZNF589Q86UQ0 364 aaPredicted RBP16.65■□□□□ 0.26
SYNE1-226ENST00000488376 AMOTL1Q8IY63 956 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.65■□□□□ 0.26
SYNE1-226ENST00000488376 TXNRD2Q9NNW7 524 aa16.65■□□□□ 0.26
SYNE1-226ENST00000488376 PRDM1O75626 825 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 GNAT2P19087 354 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 VCAM1P19320 739 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 HOXA7P31268 230 aaPredicted RBP16.64■□□□□ 0.25
SYNE1-226ENST00000488376 KIF22Q14807 665 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 TMEM179Q6ZVK1 233 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 C12orf42Q96LP6 360 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 PNMA3Q9UL41 463 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 GABRQQ9UN88 632 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 TACC3Q9Y6A5 838 aa16.64■□□□□ 0.25
SYNE1-226ENST00000488376 FMNL1O95466 1100 aaPredicted RBP16.63■□□□□ 0.25
SYNE1-226ENST00000488376 HERVK_113P62684 666 aa16.63■□□□□ 0.25
SYNE1-226ENST00000488376 IRX3P78415 501 aaPredicted RBP16.63■□□□□ 0.25
SYNE1-226ENST00000488376 ICA1Q05084 483 aa16.63■□□□□ 0.25
SYNE1-226ENST00000488376 PRKCZQ05513 592 aa16.63■□□□□ 0.25
SYNE1-226ENST00000488376 INCENPQ9NQS7 918 aa16.63■□□□□ 0.25
SYNE1-226ENST00000488376 GSPT1P15170 499 aaKnown RBP16.62■□□□□ 0.25
SYNE1-226ENST00000488376 SDSP20132 328 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 PABPC4Q13310 644 aaKnown RBP eCLIP16.62■□□□□ 0.25
SYNE1-226ENST00000488376 FAM110CQ1W6H9 321 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 SH3TC2Q8TF17 1288 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 CCDC17Q96LX7 622 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 RPAP3Q9H6T3 665 aaPredicted RBP16.62■□□□□ 0.25
SYNE1-226ENST00000488376 HELLSQ9NRZ9 838 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 RBPJLQ9UBG7 517 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 SRRDQ9UH36 339 aa16.62■□□□□ 0.25
SYNE1-226ENST00000488376 MYCP01106 439 aaPredicted RBP16.61■□□□□ 0.25
SYNE1-226ENST00000488376 EEF2P13639 858 aaKnown RBP16.61■□□□□ 0.25
SYNE1-226ENST00000488376 USP14P54578 494 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 FCGRTP55899 365 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 CTDSPL2Q05D32 466 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 PPARAQ07869 468 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 SKAP1Q86WV1 359 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 SPICE1Q8N0Z3 855 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 NAPBQ9H115 298 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 TAOK2Q9UL54 1235 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 MYPNQ86TC9 1320 aa16.61■□□□□ 0.25
SYNE1-226ENST00000488376 CNMDO75829 334 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 GCLCP48506 637 aaPredicted RBP16.6■□□□□ 0.25
SYNE1-226ENST00000488376 ATP2B2Q01814 1243 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 Q3C1V9 767 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 MCMDC2Q4G0Z9 681 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 CATSPERGQ6ZRH7 1159 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 ARMC5Q96C12 935 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 NACAP1Q9BZK3 213 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 IL25Q9H293 177 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 MKNK2Q9HBH9 465 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 MORF4L1Q9UBU8 362 aa16.6■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L15C9J2P7 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L13C9JLJ4 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L11C9JVI0 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L18D6R9N7 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L22D6RA61 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L17D6RBQ6 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L19D6RCP7 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L20D6RJB6 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 TNPO2O14787 897 aaKnown RBP16.59■□□□□ 0.25
SYNE1-226ENST00000488376 GNRH1P01148 92 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 USP17L24Q0WX57 530 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 ARHGEF6Q15052 776 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 SLC9C1Q4G0N8 1177 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 FAM47AQ5JRC9 791 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 PAGR1Q9BTK6 254 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 TMX2Q9Y320 296 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 CENPFP49454 3210 aa16.59■□□□□ 0.25
SYNE1-226ENST00000488376 GREB1LQ9C091 1923 aaPredicted RBP16.58■□□□□ 0.25
SYNE1-226ENST00000488376 IGKV6D-41A0A0C4DH26 115 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 POTEFA5A3E0 1075 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 SPDYE16A6NNV3 312 aaPredicted RBP16.58■□□□□ 0.24
SYNE1-226ENST00000488376 HSPD1P10809 573 aaKnown RBP16.58■□□□□ 0.24
SYNE1-226ENST00000488376 TTC22Q5TAA0 569 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 ZNF333Q96JL9 665 aa16.58■□□□□ 0.24
SYNE1-226ENST00000488376 PORCNQ9H237 461 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms