RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 USP17L17D6RBQ6 530 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 USP17L19D6RCP7 530 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 USP17L20D6RJB6 530 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 DNAJB2P25686 324 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 MRPS5P82675 430 aaKnown RBP11.45□□□□□ -0.58
COL17A1-207ENST00000488320 TLE2Q04725 743 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 USP17L24Q0WX57 530 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 ZYXQ15942 572 aaKnown RBP11.45□□□□□ -0.58
COL17A1-207ENST00000488320 FOXP4Q8IVH2 680 aaPredicted RBP11.45□□□□□ -0.58
COL17A1-207ENST00000488320 ASB2Q96Q27 587 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 GINM1Q9NU53 330 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 THEGQ9P2T0 379 aa11.45□□□□□ -0.58
COL17A1-207ENST00000488320 CNMDO75829 334 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 HOXC6P09630 235 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 JAG1P78504 1218 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 CCDC85BQ15834 202 aaPredicted RBP11.44□□□□□ -0.58
COL17A1-207ENST00000488320 CCDC184Q52MB2 194 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 GORABQ5T7V8 394 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 CCDC129Q6ZRS4 1044 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 TBC1D9Q6ZT07 1266 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 MRPL50Q8N5N7 158 aaKnown RBP11.44□□□□□ -0.58
COL17A1-207ENST00000488320 SH3RF3Q8TEJ3 882 aaPredicted RBP11.44□□□□□ -0.58
COL17A1-207ENST00000488320 NSUN4Q96CB9 384 aaKnown RBP11.44□□□□□ -0.58
COL17A1-207ENST00000488320 TIFAQ96CG3 184 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 NEUROD6Q96NK8 337 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 FEZ1Q99689 392 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 ZBTB21Q9ULJ3 1066 aa11.44□□□□□ -0.58
COL17A1-207ENST00000488320 PA2G4Q9UQ80 394 aaKnown RBP11.44□□□□□ -0.58
COL17A1-207ENST00000488320 PTPRCP08575 1304 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 PDS5AQ29RF7 1337 aaKnown RBP11.43□□□□□ -0.58
COL17A1-207ENST00000488320 ZBTB22O15209 634 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 SEPT4O43236 478 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 BAG3O95817 575 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 CLTBP09497 229 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 CYBAP13498 195 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 EPHB4P54760 987 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 FPGSQ05932 587 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 GRB14Q14449 540 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 MVPQ14764 893 aaKnown RBP11.43□□□□□ -0.58
COL17A1-207ENST00000488320 SNX17Q15036 470 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 SHROOM1Q2M3G4 852 aaPredicted RBP11.43□□□□□ -0.58
COL17A1-207ENST00000488320 POTEEQ6S8J3 1075 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 MAPKAPK5Q8IW41 473 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 ZNF384Q8TF68 577 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 TGFBRAP1Q8WUH2 860 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 XAGE2Q96GT9 111 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 TMEM39AQ9NV64 488 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 LRP2BPQ9P2M1 347 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 AKAP2Q9Y2D5 859 aa11.43□□□□□ -0.58
COL17A1-207ENST00000488320 A0A1B0GUL7 405 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 UBTFL1P0CB47 393 aaPredicted RBP11.42□□□□□ -0.58
COL17A1-207ENST00000488320 IGFBP4P22692 258 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 ITGB8P26012 769 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 LRRC41Q15345 812 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 PRAMEF19Q5SWL8 479 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 C1orf53Q5VUE5 145 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 CATSPERGQ6ZRH7 1159 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 SPATA5Q8NB90 893 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 C1QTNF1Q9BXJ1 281 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
COL17A1-207ENST00000488320 AATFQ9NY61 560 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL17A1-207ENST00000488320 SLC5A4Q9NY91 659 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 HMG20BQ9P0W2 317 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 BTBD7Q9P203 1132 aa11.42□□□□□ -0.58
COL17A1-207ENST00000488320 MYO9BQ13459 2157 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 PQBP1O60828 265 aaKnown RBP11.41□□□□□ -0.58
COL17A1-207ENST00000488320 GH2P01242 217 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 HLA-DOAP06340 250 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 PLCG2P16885 1265 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 ADORA2AP29274 412 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 USP14P54578 494 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 AKNAD1Q5T1N1 836 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 OLFML2BQ68BL8 750 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 ATF7IPQ6VMQ6 1270 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 PRDM12Q9H4Q4 367 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 PALD1Q9ULE6 856 aa11.41□□□□□ -0.58
COL17A1-207ENST00000488320 TCF20Q9UGU0 1960 aaKnown RBP11.41□□□□□ -0.58
COL17A1-207ENST00000488320 KIAA0355O15063 1070 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 STRNO43815 780 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 TFCP2Q12800 502 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 RAB3GAP1Q15042 981 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 NAA16Q6N069 864 aaPredicted RBP11.4□□□□□ -0.58
COL17A1-207ENST00000488320 RNF180Q86T96 592 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 C12orf42Q96LP6 360 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 DNAJC18Q9H819 358 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 SAP30BPQ9UHR5 308 aaKnown RBP11.4□□□□□ -0.58
COL17A1-207ENST00000488320 HDAC5Q9UQL6 1122 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 HCN4Q9Y3Q4 1203 aa11.4□□□□□ -0.58
COL17A1-207ENST00000488320 PLXNA1Q9UIW2 1896 aa11.4□□□□□ -0.59
COL17A1-207ENST00000488320 DCDC2CA8MYV0 355 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 RARBP10826 455 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 FAM47AQ5JRC9 791 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 CCDC174Q6PII3 467 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 PI16Q6UXB8 463 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 METTL16Q86W50 562 aaKnown RBP11.39□□□□□ -0.59
COL17A1-207ENST00000488320 SLC44A5Q8NCS7 719 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 RPAP3Q9H6T3 665 aaPredicted RBP11.39□□□□□ -0.59
COL17A1-207ENST00000488320 COPRSQ9NQ92 184 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 XPNPEP3Q9NQH7 507 aa11.39□□□□□ -0.59
COL17A1-207ENST00000488320 MSRAQ9UJ68 235 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms