RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 PLCG1P19174 1290 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 MLANAQ16655 118 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 TMEM201Q5SNT2 666 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 GATAD2BQ8WXI9 593 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 DPH2Q9BQC3 489 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-205ENST00000473295 RSRP1Q9BUV0 290 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 BCL11AQ9H165 835 aa5.71□□□□□ -1.5
SCN1A-205ENST00000473295 ZNF503-AS2A6NEH8 195 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 CILPO75339 1184 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 CTSHP09668 335 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 CAMK2GQ13555 558 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-205ENST00000473295 MPZL3Q6UWV2 235 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 FBXO33Q7Z6M2 555 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 FAM13CQ8NE31 585 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 DNAJB8Q8NHS0 232 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 GPATCH2Q9NW75 528 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 VTI1BQ9UEU0 232 aa5.7□□□□□ -1.5
SCN1A-205ENST00000473295 GBP2P32456 591 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-205ENST00000473295 MESP2Q0VG99 397 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 CCDC27Q2M243 656 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 SLFN12Q8IYM2 578 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 RNF141Q8WVD5 230 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 SYTL4Q96C24 671 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-205ENST00000473295 RHOVQ96L33 236 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 TMEM74Q96NL1 305 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.69□□□□□ -1.5
SCN1A-205ENST00000473295 TMEM59LQ9UK28 342 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 PRR36Q9H6K5 1346 aa5.69□□□□□ -1.5
SCN1A-205ENST00000473295 FAM221AA4D161 298 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 PF4P02776 101 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 TPP2P29144 1249 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-205ENST00000473295 MLECQ14165 292 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 MPP2Q14168 576 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 ZNF124Q15973 351 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 FYB2Q5VWT5 728 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 BNC2Q6ZN30 1099 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-205ENST00000473295 TTC6Q86TZ1 520 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 Q96M66 194 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 GPR62Q9BZJ7 368 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 C19orf73Q9NVV2 129 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 SLAMF8Q9P0V8 285 aa5.68□□□□□ -1.5
SCN1A-205ENST00000473295 KRTAP4-8A0A0G2JLE6 195 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 F13A1P00488 732 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 ESR1P03372 595 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 TNNI2P48788 182 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 CHMP4BP1P59074 171 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 KRTAP19-4Q3LI73 84 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 SNAP47Q5SQN1 464 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 CREG2Q8IUH2 290 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 ABHD4Q8TB40 342 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 PPP1R13LQ8WUF5 828 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 LIN37Q96GY3 246 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-205ENST00000473295 CCDC74BQ96LY2 380 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 FAM161BQ96MY7 647 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 ASPNQ9BXN1 380 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 DUSP13Q9UII6 198 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 CORINQ9Y5Q5 1042 aa5.67□□□□□ -1.5
SCN1A-205ENST00000473295 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-205ENST00000473295 TSPAN15O95858 294 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 SRFP11831 508 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 RAP1GAPP47736 663 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 TSPYL5Q86VY4 417 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-205ENST00000473295 DTWD2Q8NBA8 298 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 FBXO15Q8NCQ5 510 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-205ENST00000473295 DHX38Q92620 1227 aaKnown RBP5.66□□□□□ -1.5
SCN1A-205ENST00000473295 TOX2Q96NM4 488 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 DUSP15Q9H1R2 295 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-205ENST00000473295 REV1Q9UBZ9 1251 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 ROBO2Q9HCK4 1378 aa5.66□□□□□ -1.5
SCN1A-205ENST00000473295 UPK3BL1B0FP48 263 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 UPK3BL2E5RIL1 263 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 HPXP02790 462 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 GAB4Q2WGN9 574 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 PRR23BQ6ZRT6 265 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 REC114Q7Z4M0 266 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 LILRA2Q8N149 483 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 MYLIPQ8WY64 445 aa5.65□□□□□ -1.5
SCN1A-205ENST00000473295 DNAJC25-GNG10A0A024R161 153 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 NFIBO00712 420 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 HTR3BO95264 441 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 LTKP29376 864 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 EGR3Q06889 387 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 CWF19L2Q2TBE0 894 aaKnown RBP5.64□□□□□ -1.51
SCN1A-205ENST00000473295 RALGPS1Q5JS13 557 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 SYDE1Q6ZW31 735 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-205ENST00000473295 PHACTR4Q8IZ21 702 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 OXR1Q8N573 874 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 GOLM1Q8NBJ4 401 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 PDZD8Q8NEN9 1154 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 ASCC2Q9H1I8 757 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-205ENST00000473295 KLHL3Q9UH77 587 aa5.64□□□□□ -1.51
SCN1A-205ENST00000473295 MINDY4BA8MYZ0 360 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 F6X3S4 739 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 GBP1P32455 592 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 HK2P52789 917 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 FAM160A1Q05DH4 1040 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 ZNF326Q5BKZ1 582 aaKnown RBP5.63□□□□□ -1.51
SCN1A-205ENST00000473295 FAM196AQ6ZSG2 479 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 ANKLE2Q86XL3 938 aa5.63□□□□□ -1.51
SCN1A-205ENST00000473295 ZSCAN18Q8TBC5 510 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms