RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 ARHGAP39Q9C0H5 1083 aa28.29■■■□□ 2.12
VARS-217ENST00000440048 EMILIN3Q9NT22 766 aa28.29■■■□□ 2.12
VARS-217ENST00000440048 AKR1B1P15121 316 aa28.28■■■□□ 2.12
VARS-217ENST00000440048 PDE4AP27815 886 aa28.28■■■□□ 2.12
VARS-217ENST00000440048 TMEM179Q6ZVK1 233 aa28.28■■■□□ 2.12
VARS-217ENST00000440048 SMCR8Q8TEV9 937 aaPredicted RBP28.28■■■□□ 2.12
VARS-217ENST00000440048 FEZ1Q99689 392 aa28.28■■■□□ 2.12
VARS-217ENST00000440048 OSBPP22059 807 aa28.27■■■□□ 2.12
VARS-217ENST00000440048 CCDC17Q96LX7 622 aa28.27■■■□□ 2.12
VARS-217ENST00000440048 NACAP1Q9BZK3 213 aa28.27■■■□□ 2.12
VARS-217ENST00000440048 KIAA1683Q9H0B3 1180 aa28.27■■■□□ 2.12
VARS-217ENST00000440048 ASCC2Q9H1I8 757 aaPredicted RBP28.27■■■□□ 2.12
VARS-217ENST00000440048 HELLSQ9NRZ9 838 aa28.27■■■□□ 2.12
VARS-217ENST00000440048 HOXA7P31268 230 aaPredicted RBP28.26■■■□□ 2.11
VARS-217ENST00000440048 MLLT1Q03111 559 aaPredicted RBP28.26■■■□□ 2.11
VARS-217ENST00000440048 ZYXQ15942 572 aaKnown RBP28.26■■■□□ 2.11
VARS-217ENST00000440048 FAM227BQ96M60 508 aa28.26■■■□□ 2.11
VARS-217ENST00000440048 PTPN22Q9Y2R2 807 aa28.26■■■□□ 2.11
VARS-217ENST00000440048 ROBO3Q96MS0 1386 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 A0A0D9SFI3 127 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 ECM2O94769 699 aaPredicted RBP28.25■■■□□ 2.11
VARS-217ENST00000440048 CTGFP29279 349 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 USP14P54578 494 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 STK11IPQ8N1F8 1099 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 C12orf42Q96LP6 360 aa28.25■■■□□ 2.11
VARS-217ENST00000440048 MGAMO43451 1857 aa28.24■■■□□ 2.11
VARS-217ENST00000440048 FOXP2O15409 715 aa28.24■■■□□ 2.11
VARS-217ENST00000440048 NAPBQ9H115 298 aa28.24■■■□□ 2.11
VARS-217ENST00000440048 A0A1W2PRG0 241 aa28.23■■■□□ 2.11
VARS-217ENST00000440048 PSMC4P43686 418 aa28.23■■■□□ 2.11
VARS-217ENST00000440048 IRX3P78415 501 aaPredicted RBP28.23■■■□□ 2.11
VARS-217ENST00000440048 NMIQ13287 307 aaPredicted RBP28.23■■■□□ 2.11
VARS-217ENST00000440048 MCMDC2Q4G0Z9 681 aa28.23■■■□□ 2.11
VARS-217ENST00000440048 TRIM47Q96LD4 638 aa28.23■■■□□ 2.11
VARS-217ENST00000440048 SDSP20132 328 aa28.22■■■□□ 2.11
VARS-217ENST00000440048 GCLCP48506 637 aaPredicted RBP28.22■■■□□ 2.11
VARS-217ENST00000440048 VPS53Q5VIR6 699 aa28.22■■■□□ 2.11
VARS-217ENST00000440048 CLEC10AQ8IUN9 316 aa28.22■■■□□ 2.11
VARS-217ENST00000440048 ANKRD13CQ8N6S4 541 aa28.22■■■□□ 2.11
VARS-217ENST00000440048 P2RX7Q99572 595 aaKnown RBP28.22■■■□□ 2.11
VARS-217ENST00000440048 MKNK2Q9HBH9 465 aa28.22■■■□□ 2.11
VARS-217ENST00000440048 GNRH1P01148 92 aa28.21■■■□□ 2.11
VARS-217ENST00000440048 RASA1P20936 1047 aa28.21■■■□□ 2.11
VARS-217ENST00000440048 SIAH1Q8IUQ4 282 aa28.21■■■□□ 2.11
VARS-217ENST00000440048 FMNL1O95466 1100 aaPredicted RBP28.2■■■□□ 2.1
VARS-217ENST00000440048 ICA1Q05084 483 aa28.2■■■□□ 2.1
VARS-217ENST00000440048 PDE4DIPQ5VU43 2346 aa28.2■■■□□ 2.1
VARS-217ENST00000440048 GREB1LQ9C091 1923 aaPredicted RBP28.2■■■□□ 2.1
VARS-217ENST00000440048 VCAM1P19320 739 aa28.19■■■□□ 2.1
VARS-217ENST00000440048 FAM110CQ1W6H9 321 aa28.19■■■□□ 2.1
VARS-217ENST00000440048 ZNF589Q86UQ0 364 aaPredicted RBP28.19■■■□□ 2.1
VARS-217ENST00000440048 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.19■■■□□ 2.1
VARS-217ENST00000440048 ARHGEF10LQ9HCE6 1279 aa28.19■■■□□ 2.1
VARS-217ENST00000440048 CENPFP49454 3210 aa28.19■■■□□ 2.1
VARS-217ENST00000440048 USP17L15C9J2P7 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L13C9JLJ4 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L11C9JVI0 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L18D6R9N7 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L22D6RA61 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L17D6RBQ6 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L19D6RCP7 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L20D6RJB6 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 FCGRTP55899 365 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 HERVK_113P62684 666 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 PPARAQ07869 468 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 USP17L24Q0WX57 530 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 PTCH2Q9Y6C5 1203 aa28.18■■■□□ 2.1
VARS-217ENST00000440048 KIAA0100Q14667 2235 aaKnown RBP28.17■■■□□ 2.1
VARS-217ENST00000440048 PRDM1O75626 825 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 SOX10P56693 466 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 TTC22Q5TAA0 569 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 KANSL2Q9H9L4 492 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 ZNF287Q9HBT7 754 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 SRRDQ9UH36 339 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 TMX2Q9Y320 296 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 CCDC171Q6TFL3 1326 aa28.17■■■□□ 2.1
VARS-217ENST00000440048 DOCK3Q8IZD9 2030 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 EEF2P13639 858 aaKnown RBP28.16■■■□□ 2.1
VARS-217ENST00000440048 GSPT1P15170 499 aaKnown RBP28.16■■■□□ 2.1
VARS-217ENST00000440048 HOXD10P28358 340 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 PRMT2P55345 433 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 ALX1Q15699 326 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 CATSPERGQ6ZRH7 1159 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 SH2D4AQ9H788 454 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 MORF4L1Q9UBU8 362 aa28.16■■■□□ 2.1
VARS-217ENST00000440048 SLC3A2P08195 630 aaKnown RBP28.15■■■□□ 2.1
VARS-217ENST00000440048 KIAA1755Q5JYT7 1200 aa28.15■■■□□ 2.1
VARS-217ENST00000440048 ZNF444Q8N0Y2 327 aaPredicted RBP28.15■■■□□ 2.1
VARS-217ENST00000440048 RPAP3Q9H6T3 665 aaPredicted RBP28.15■■■□□ 2.1
VARS-217ENST00000440048 DIAPH3Q9NSV4 1193 aa28.15■■■□□ 2.1
VARS-217ENST00000440048 HIP1O00291 1037 aa28.14■■■□□ 2.1
VARS-217ENST00000440048 HSPD1P10809 573 aaKnown RBP28.14■■■□□ 2.1
VARS-217ENST00000440048 ATP2B2Q01814 1243 aa28.14■■■□□ 2.1
VARS-217ENST00000440048 PDE4BQ07343 736 aa28.14■■■□□ 2.1
VARS-217ENST00000440048 TXNRD2Q9NNW7 524 aa28.14■■■□□ 2.1
VARS-217ENST00000440048 PEX10O60683 326 aa28.13■■■□□ 2.09
VARS-217ENST00000440048 CTDSPL2Q05D32 466 aa28.13■■■□□ 2.09
VARS-217ENST00000440048 POTEEQ6S8J3 1075 aa28.13■■■□□ 2.09
VARS-217ENST00000440048 CWC27Q6UX04 472 aaKnown RBP28.13■■■□□ 2.09
VARS-217ENST00000440048 GTF3C2Q8WUA4 911 aaPredicted RBP28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms