RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PLEKHM2Q8IWE5 1019 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 CCDC17Q96LX7 622 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 ARHGAP39Q9C0H5 1083 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 ASCC2Q9H1I8 757 aaPredicted RBP18.18■□□□□ 0.5
LIMS3-201ENST00000437679 FMNL1O95466 1100 aaPredicted RBP18.17■□□□□ 0.5
LIMS3-201ENST00000437679 HOXD10P28358 340 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 HOXA7P31268 230 aaPredicted RBP18.17■□□□□ 0.5
LIMS3-201ENST00000437679 GUCY1A2P33402 732 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 FCGRTP55899 365 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 ZYXQ15942 572 aaKnown RBP18.17■□□□□ 0.5
LIMS3-201ENST00000437679 KIAA1683Q9H0B3 1180 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 OSBPL3Q9H4L5 887 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 EMILIN3Q9NT22 766 aa18.17■□□□□ 0.5
LIMS3-201ENST00000437679 SMIM22K7EJ46 135 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 AKR1B1P15121 316 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 PRMT2P55345 433 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 IFNL3Q8IZI9 196 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 ANKRD13CQ8N6S4 541 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 ACER1Q8TDN7 264 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 RILPL2Q969X0 211 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 TRIM47Q96LD4 638 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 C12orf42Q96LP6 360 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 EPB41L4AQ9HCS5 686 aaPredicted RBP18.16■□□□□ 0.5
LIMS3-201ENST00000437679 ZSWIM8A7E2V4 1837 aa18.16■□□□□ 0.5
LIMS3-201ENST00000437679 FAM110CQ1W6H9 321 aa18.15■□□□□ 0.5
LIMS3-201ENST00000437679 MKNK2Q9HBH9 465 aa18.15■□□□□ 0.5
LIMS3-201ENST00000437679 HELLSQ9NRZ9 838 aa18.15■□□□□ 0.5
LIMS3-201ENST00000437679 CTGFP29279 349 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 ICA1Q05084 483 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 CCDC129Q6ZRS4 1044 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 STK11IPQ8N1F8 1099 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 P2RX7Q99572 595 aaKnown RBP18.14■□□□□ 0.49
LIMS3-201ENST00000437679 NAPBQ9H115 298 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 SH2D4AQ9H788 454 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 ZNF287Q9HBT7 754 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 ARHGEF10LQ9HCE6 1279 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 SRRDQ9UH36 339 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 PTCH2Q9Y6C5 1203 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 ROBO3Q96MS0 1386 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 MGAMO43451 1857 aa18.14■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L15C9J2P7 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L13C9JLJ4 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L11C9JVI0 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L18D6R9N7 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L22D6RA61 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L17D6RBQ6 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L19D6RCP7 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L20D6RJB6 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 SLC3A2P08195 630 aaKnown RBP18.13■□□□□ 0.49
LIMS3-201ENST00000437679 USP17L24Q0WX57 530 aa18.13■□□□□ 0.49
LIMS3-201ENST00000437679 GTF3C2Q8WUA4 911 aaPredicted RBP18.13■□□□□ 0.49
LIMS3-201ENST00000437679 A0A1W2PRG0 241 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 VCAM1P19320 739 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 SOX10P56693 466 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 HERVK_113P62684 666 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 SLC9C1Q4G0N8 1177 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 MCMDC2Q4G0Z9 681 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 NBPF11Q86T75 865 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 FAM227BQ96M60 508 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 KANSL2Q9H9L4 492 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 MYPNQ86TC9 1320 aa18.12■□□□□ 0.49
LIMS3-201ENST00000437679 TNPO2O14787 897 aaKnown RBP18.11■□□□□ 0.49
LIMS3-201ENST00000437679 RASA1P20936 1047 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 ATP2B2Q01814 1243 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 NMIQ13287 307 aaPredicted RBP18.11■□□□□ 0.49
LIMS3-201ENST00000437679 CATSPERGQ6ZRH7 1159 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 ZNF444Q8N0Y2 327 aaPredicted RBP18.11■□□□□ 0.49
LIMS3-201ENST00000437679 RAET1EQ8TD07 263 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 ARMC5Q96C12 935 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 MORF4L1Q9UBU8 362 aa18.11■□□□□ 0.49
LIMS3-201ENST00000437679 A0A0D9SFI3 127 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 SDSP20132 328 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 PDE4BQ07343 736 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 PPARAQ07869 468 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 CLEC10AQ8IUN9 316 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 COA7Q96BR5 231 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 RPAP3Q9H6T3 665 aaPredicted RBP18.1■□□□□ 0.49
LIMS3-201ENST00000437679 TMX2Q9Y320 296 aa18.1■□□□□ 0.49
LIMS3-201ENST00000437679 HTTP42858 3142 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 HIP1O00291 1037 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 EEF2P13639 858 aaKnown RBP18.09■□□□□ 0.49
LIMS3-201ENST00000437679 PDE4AP27815 886 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 RGS19P49795 217 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 MFAP1P55081 439 aaKnown RBP18.09■□□□□ 0.49
LIMS3-201ENST00000437679 PRKCZQ05513 592 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 SIAH1Q8IUQ4 282 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 GPRC5AQ8NFJ5 357 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 LPAR1Q92633 364 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 PAGR1Q9BTK6 254 aa18.09■□□□□ 0.49
LIMS3-201ENST00000437679 DOCK3Q8IZD9 2030 aa18.08■□□□□ 0.49
LIMS3-201ENST00000437679 PRDM1O75626 825 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 VPS53Q5VIR6 699 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 TANGO6Q9C0B7 1094 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 VCPKMTQ9H867 229 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 DIAPH3Q9NSV4 1193 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 RBPJLQ9UBG7 517 aa18.08■□□□□ 0.48
LIMS3-201ENST00000437679 KIAA0100Q14667 2235 aaKnown RBP18.08■□□□□ 0.48
LIMS3-201ENST00000437679 CCDC171Q6TFL3 1326 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 FOXP2O15409 715 aa18.07■□□□□ 0.48
LIMS3-201ENST00000437679 ERVK-9P63128 1117 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms