RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 GMPRP36959 345 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 GYS2P54840 703 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 SSRP1Q08945 709 aaKnown RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 BBS9Q3SYG4 887 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 OVOS1Q6IE37 1185 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 LRFN4Q6PJG9 635 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 C6orf15Q6UXA7 325 aaPredicted RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 C20orf204Q6ZNR8 217 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 LRRC47Q8N1G4 583 aaKnown RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 IL22RA1Q8N6P7 574 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 MICAL1Q8TDZ2 1067 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 ELMO3Q96BJ8 720 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 PLPPR2Q96GM1 343 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 REV1Q9UBZ9 1251 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 PTCH2Q9Y6C5 1203 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 DIP2CQ9Y2E4 1556 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 KDM2BQ8NHM5 1336 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 ZNF335Q9H4Z2 1342 aaPredicted RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 FAM181BA6NEQ2 426 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 SLC22A31A6NKX4 558 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 NEURL1BA8MQ27 555 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 UPK3BL1B0FP48 263 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 UPK3BL2E5RIL1 263 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 H3BM21 787 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 FSCN2O14926 492 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 PLCG1P19174 1290 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 HSPA1LP34931 641 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 BAG6P46379 1132 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 GAS6Q14393 721 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 SUZ12Q15022 739 aaKnown RBP5.65□□□□□ -1.5
HMGB3-203ENST00000430118 EFCAB2Q5VUJ9 269 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 VHLLQ6RSH7 139 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 KRT26Q7Z3Y9 468 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 ATG4CQ96DT6 458 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 CCDC86Q9H6F5 360 aaKnown RBP5.65□□□□□ -1.5
HMGB3-203ENST00000430118 KANSL2Q9H9L4 492 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 JPH1Q9HDC5 661 aaPredicted RBP5.65□□□□□ -1.5
HMGB3-203ENST00000430118 LRRC4BQ9NT99 713 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 GGA1Q9UJY5 639 aa5.65□□□□□ -1.5
HMGB3-203ENST00000430118 KIF14Q15058 1648 aa5.65□□□□□ -1.51
HMGB3-203ENST00000430118 MYO3AQ8NEV4 1616 aa5.65□□□□□ -1.51
HMGB3-203ENST00000430118 PRXQ9BXM0 1461 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 ARHGAP5Q13017 1502 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 CEP170BQ9Y4F5 1589 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-203ENST00000430118 LILRB5O75023 590 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 RFPL3O75679 317 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 SLFN14P0C7P3 912 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 EPXP11678 715 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 MAOBP27338 520 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 ERVK-24P63145 666 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 RING1Q06587 406 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 INPP5AQ14642 412 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 ZC3H12AQ5D1E8 599 aaKnown RBP5.64□□□□□ -1.51
HMGB3-203ENST00000430118 UNC5AQ6ZN44 842 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 RUFY4Q6ZNE9 571 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 WFDC8Q8IUA0 241 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 SLFN12Q8IYM2 578 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 SLC7A3Q8WY07 619 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 SMARCC1Q92922 1105 aaPredicted RBP5.64□□□□□ -1.51
HMGB3-203ENST00000430118 DHRS1Q96LJ7 313 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 SPATA9Q9BWV2 254 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 LEMD3Q9Y2U8 911 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 CLIP1P30622 1438 aa5.64□□□□□ -1.51
HMGB3-203ENST00000430118 TCOF1Q13428 1488 aaKnown RBP5.64□□□□□ -1.51
HMGB3-203ENST00000430118 AGRPO00253 132 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 FANCGO15287 622 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 ZNF862O60290 1169 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 VSIG8P0DPA2 414 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 ACRP10323 421 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 MASP1P48740 699 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 AFF1P51825 1210 aaKnown RBP5.63□□□□□ -1.51
HMGB3-203ENST00000430118 YARSP54577 528 aaKnown RBP5.63□□□□□ -1.51
HMGB3-203ENST00000430118 SLC7A5Q01650 507 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 PDE3AQ14432 1141 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 CCDC181Q5TID7 509 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 MSL1Q68DK7 614 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 MRM1Q6IN84 353 aaKnown RBP5.63□□□□□ -1.51
HMGB3-203ENST00000430118 MPRIPQ6WCQ1 1025 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 SPATC1Q76KD6 591 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 DTWD1Q8N5C7 304 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 PCGF6Q9BYE7 350 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 WNT10AQ9GZT5 417 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 ANTXR1Q9H6X2 564 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 ZNF214Q9UL59 606 aaPredicted RBP5.63□□□□□ -1.51
HMGB3-203ENST00000430118 STARD13Q9Y3M8 1113 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 PCDHGC5Q9Y5F6 944 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 MLH3Q9UHC1 1453 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 ABCA6Q8N139 1617 aa5.63□□□□□ -1.51
HMGB3-203ENST00000430118 B2RBV5 119 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 LINC01387J3KSC0 135 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 TM4SF5O14894 197 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 SUSD5O60279 629 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 DIAPH1O60610 1272 aaKnown RBP5.62□□□□□ -1.51
HMGB3-203ENST00000430118 CAP2P40123 477 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 CDK8P49336 464 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 SRSF11Q05519 484 aaKnown RBP5.62□□□□□ -1.51
HMGB3-203ENST00000430118 SLC10A6Q3KNW5 377 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 SLC6A19Q695T7 634 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 MCATQ8IVS2 390 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms