RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZRSR1Q15695 479 aaKnown RBP11.29□□□□□ -0.6
SS18-203ENST00000415083 SPECC1LQ69YQ0 1117 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 FCHSD1Q86WN1 690 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 PAGE5Q96GU1 130 aa11.29□□□□□ -0.6
SS18-203ENST00000415083 URI1O94763 535 aaPredicted RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 DEXIO95424 95 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 KLRK1P26718 216 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 PLCD1P51178 756 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 CHRNDQ07001 517 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 GNL2Q13823 731 aaKnown RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 E2F4Q16254 413 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 HOMER1Q86YM7 354 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 LRRC15Q8TF66 581 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 STAMQ92783 540 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 DHX58Q96C10 678 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 KRT23Q9C075 422 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 ANAPC4Q9UJX5 808 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 STX17P56962 302 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 RBL2Q08999 1139 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 TROAPQ12815 778 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 MAP3K12Q12852 859 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 RILPL1Q5EBL4 403 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 SYMPKQ92797 1274 aaKnown RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 ADD3Q9UEY8 706 aaKnown RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 COL14A1Q05707 1796 aaKnown RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 ZBTB22O15209 634 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 CBFA2T2O43439 604 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 SLC5A1P13866 664 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 CDC25AP30304 524 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 GYG1P46976 350 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
SS18-203ENST00000415083 OLFM4Q6UX06 510 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 SMIM5Q71RC9 77 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 NUP133Q8WUM0 1156 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 CNNM2Q9H8M5 875 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 RAI14Q9P0K7 980 aa11.28□□□□□ -0.6
SS18-203ENST00000415083 STX10O60499 249 aa11.27□□□□□ -0.6
SS18-203ENST00000415083 TDO2P48775 406 aa11.27□□□□□ -0.6
SS18-203ENST00000415083 FXR1P51114 621 aaKnown RBP eCLIP11.27□□□□□ -0.6
SS18-203ENST00000415083 TPM4P67936 248 aa11.27□□□□□ -0.6
SS18-203ENST00000415083 TRIM29Q14134 588 aa11.27□□□□□ -0.6
SS18-203ENST00000415083 MLKLQ8NB16 471 aa11.27□□□□□ -0.6
SS18-203ENST00000415083 ZCCHC17Q9NP64 241 aaKnown RBP11.27□□□□□ -0.6
SS18-203ENST00000415083 AATFQ9NY61 560 aaKnown RBP eCLIP11.27□□□□□ -0.6
SS18-203ENST00000415083 SBF2Q86WG5 1849 aa11.27□□□□□ -0.61
SS18-203ENST00000415083 FGRP09769 529 aa11.27□□□□□ -0.61
SS18-203ENST00000415083 AFMP43652 599 aa11.27□□□□□ -0.61
SS18-203ENST00000415083 SLC35G1Q2M3R5 365 aa11.27□□□□□ -0.61
SS18-203ENST00000415083 SMARCE1Q969G3 411 aa11.27□□□□□ -0.61
SS18-203ENST00000415083 MYO1BO43795 1136 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 GYPCP04921 128 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 SRBD1Q8N5C6 995 aaKnown RBP11.26□□□□□ -0.61
SS18-203ENST00000415083 ERICH4A6NGS2 130 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 EFCAB8A8MWE9 144 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 FECHP22830 423 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 CC2D1AQ6P1N0 951 aaPredicted RBP11.26□□□□□ -0.61
SS18-203ENST00000415083 CPLX2Q6PUV4 134 aaKnown RBP11.26□□□□□ -0.61
SS18-203ENST00000415083 ADGRG1Q9Y653 693 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 RTL9Q8NET4 1388 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 CNTNAP5Q8WYK1 1306 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 CRKLP46109 303 aaKnown RBP11.26□□□□□ -0.61
SS18-203ENST00000415083 ERVK-24P63145 666 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
SS18-203ENST00000415083 RNF26Q9BY78 433 aaPredicted RBP11.26□□□□□ -0.61
SS18-203ENST00000415083 NRAPQ86VF7 1730 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 GOLGB1Q14789 3259 aaKnown RBP11.25□□□□□ -0.61
SS18-203ENST00000415083 MINDY4BA8MYZ0 360 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 CYP7A1P22680 504 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 GNG11P61952 73 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 CTR9Q6PD62 1173 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 C4orf32Q8N8J7 132 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 ANKZF1Q9H8Y5 726 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 V9GY48 417 aaPredicted RBP11.25□□□□□ -0.61
SS18-203ENST00000415083 MYH1P12882 1939 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 NKRFO15226 690 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-203ENST00000415083 ST5P78524 1137 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 ZNF174Q15697 407 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 ZSCAN10Q96SZ4 725 aaPredicted RBP11.25□□□□□ -0.61
SS18-203ENST00000415083 TOMM22Q9NS69 142 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 TUBB4AP04350 444 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 ERCC5P28715 1186 aaPredicted RBP11.25□□□□□ -0.61
SS18-203ENST00000415083 IRF2BP1Q8IU81 584 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 TRIML1Q8N9V2 468 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 FUT8Q9BYC5 575 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 PARD6BQ9BYG5 372 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 BLZF1Q9H2G9 400 aa11.25□□□□□ -0.61
SS18-203ENST00000415083 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-203ENST00000415083 FAM205AQ6ZU69 1335 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 PRPF3O43395 683 aaKnown RBP11.24□□□□□ -0.61
SS18-203ENST00000415083 CYP2D6P10635 497 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 ARHGAP25P42331 645 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 RCAN1P53805 252 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 AK7Q96M32 723 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 MPHOSPH8Q99549 860 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 REXO2Q9Y3B8 237 aaKnown RBP11.24□□□□□ -0.61
SS18-203ENST00000415083 CDK5RAP2Q96SN8 1893 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 H3BQF6 201 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 CYP2C19P33261 490 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 PPP2R3AQ06190 1150 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 BMS1Q14692 1282 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms