RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 C2CD5Q86YS7 1000 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 HAUS2Q9NVX0 235 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 NFU1Q9UMS0 254 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 E9PCH4 1651 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 HEXIM1O94992 359 aaKnown RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 KIF23Q02241 960 aaPredicted RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC38Q502W7 563 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 COPS6Q7L5N1 327 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC25Q86WR0 208 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 ENGASEQ8NFI3 743 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 TTC37Q6PGP7 1564 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 MAP3K19Q56UN5 1328 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC160A6NGH7 325 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 NUTM2BA6NNL0 878 aaPredicted RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 NUTM2EB1AL46 878 aaPredicted RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 RANBP6O60518 1105 aaKnown RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 RAPGEF3O95398 923 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 CDC25AP30304 524 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 IFNAR2P48551 515 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 POLE2P56282 527 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 WTAPQ15007 396 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 CSGALNACT2Q8N6G5 542 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 MGARPQ8TDB4 240 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 NOX5Q96PH1 765 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 HELLSQ9NRZ9 838 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 FAM207AQ9NSI2 230 aaPredicted RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 ANGEL1Q9UNK9 670 aaKnown RBP10.37□□□□□ -0.75
COL28A1-201ENST00000399429 KIAA0556O60303 1618 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 ACEP12821 1306 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 DISP1Q96F81 1524 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 ESYT3A0FGR9 886 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MAP2K7O14733 419 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MCM7P33993 719 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MORC3Q14149 939 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 METTL24Q5JXM2 366 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 NLRP14Q86W24 1093 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 ZBTB10Q96DT7 871 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 SPAG5Q96R06 1193 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 VIPAS39Q9H9C1 493 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 EXOC1Q9NV70 894 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 HYOU1Q9Y4L1 999 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 RAD21O60216 631 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CEP104O60308 925 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 KRT14P02533 472 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 ATP1A1P05023 1023 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 COPB1P53618 953 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 PSMD2Q13200 908 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 SWT1Q5T5J6 900 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 FBXO31Q5XUX0 539 aaPredicted RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 ALS2CLQ60I27 953 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MFSD6Q6ZSS7 791 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 XAGE3Q8WTP9 111 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 KRT12Q99456 494 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 NUCKS1Q9H1E3 243 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 KIF9Q9HAQ2 790 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MAST1Q9Y2H9 1570 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 MRC2Q9UBG0 1479 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 HSPD1P10809 573 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 TCP1P17987 556 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CASP1P29466 404 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CMTR1Q8N1G2 835 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC197Q8NCU1 140 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 IL17RAQ96F46 866 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 TSC22D3Q99576 134 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 TRIM4Q9C037 500 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 TRIM10Q9UDY6 481 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 ZNF185O15231 689 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CTNND1O60716 968 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 ASIC1P78348 528 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 UHMK1Q8TAS1 419 aaKnown RBP10.36□□□□□ -0.75
COL28A1-201ENST00000399429 CCT8L2Q96SF2 557 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 SLC40A1Q9NP59 571 aa10.36□□□□□ -0.75
COL28A1-201ENST00000399429 KRT13P13646 458 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ERCC5P28715 1186 aaPredicted RBP10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ST3GAL1Q11201 340 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 TAF11Q15544 211 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 SOGA3Q5TF21 947 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ANKRD13DQ6ZTN6 518 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 VSIG1Q86XK7 387 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 STAG1Q8WVM7 1258 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 CD2APQ9Y5K6 639 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ARHGAP31Q2M1Z3 1444 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 hCG_1642624A0A1W2PR95 340 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ATP5JP18859 108 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 GBP1P32455 592 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 SESN3P58005 492 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 TRIML1Q8N9V2 468 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 ZNF473Q8WTR7 871 aaKnown RBP10.35□□□□□ -0.75
COL28A1-201ENST00000399429 STIM2Q9P246 746 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 CDHR2Q9BYE9 1310 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 NPATQ14207 1427 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC194A0A1B0GVG4 234 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 PPP1R37O75864 691 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 TSNAXIP1Q2TAA8 658 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 NOSTRINQ8IVI9 506 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 MIEF2Q96C03 454 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 VCXQ9H320 206 aa10.35□□□□□ -0.75
COL28A1-201ENST00000399429 FAM170AA1A519 330 aa10.34□□□□□ -0.75
COL28A1-201ENST00000399429 RANBP1P43487 201 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms