RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 EXOC7Q9UPT5 735 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 PPME1Q9Y570 386 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 INPP5BP32019 993 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 ITKQ08881 620 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 LSM14BQ9BX40 385 aaKnown RBP15.2■□□□□ 0.02
COL4A1-201ENST00000375820 ANGEL1Q9UNK9 670 aaKnown RBP15.2■□□□□ 0.02
COL4A1-201ENST00000375820 BUB1O43683 1085 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 ERCC6LQ2NKX8 1250 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 FAM47CQ5HY64 1035 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 MAP3K1Q13233 1512 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 HOXC9P31274 260 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 MAGEA1P43355 309 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 POSTNQ15063 836 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 TBC1D10BQ4KMP7 808 aaPredicted RBP15.2■□□□□ 0.02
COL4A1-201ENST00000375820 LARGE2Q8N3Y3 721 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 VCX3BQ9H321 246 aa15.2■□□□□ 0.02
COL4A1-201ENST00000375820 ZNF75DP51815 510 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 LONRF2Q1L5Z9 754 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 U2AF1L4Q8WU68 220 aaKnown RBP15.19■□□□□ 0.02
COL4A1-201ENST00000375820 EDC3Q96F86 508 aaKnown RBP15.19■□□□□ 0.02
COL4A1-201ENST00000375820 ERO1AQ96HE7 468 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 KIF3CO14782 793 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 ZAP70P43403 619 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 NBPF14Q5TI25 921 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 DPP8Q6V1X1 898 aaPredicted RBP15.19■□□□□ 0.02
COL4A1-201ENST00000375820 PEX26Q7Z412 305 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 WDR66Q8TBY9 1149 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 SWAP70Q9UH65 585 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 I3L4J1 428 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 TTF2Q9UNY4 1162 aaKnown RBP15.19■□□□□ 0.02
COL4A1-201ENST00000375820 NFE2L3Q9Y4A8 694 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 FANCAO15360 1455 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 EYA2O00167 538 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 TSC1Q92574 1164 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 DCAF5Q96JK2 942 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 ZNF532Q9HCE3 1301 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 KMT5BQ4FZB7 885 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 PCDH11XQ9BZA7 1347 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 PCDH11YQ9BZA8 1340 aa15.19■□□□□ 0.02
COL4A1-201ENST00000375820 IFNB1P01574 187 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 GCP02774 474 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 NLRP12P59046 1061 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 TSTA3Q13630 321 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 TESPA1A2RU30 521 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 PPP2R5AQ15172 486 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 SFMBT2Q5VUG0 894 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 CCDC125Q86Z20 511 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 NAP1L4Q99733 375 aaKnown RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 LGR6Q9HBX8 967 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 C2CD5Q86YS7 1000 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 OAS2P29728 719 aaKnown RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 TTC19Q6DKK2 380 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 SUCLG2Q96I99 432 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 RIOK1Q9BRS2 568 aaKnown RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 DESI2Q9BSY9 194 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 IRX3P78415 501 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 NONOQ15233 471 aaKnown RBP eCLIP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 NSMCE1Q8WV22 266 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 SERTAD1Q9UHV2 236 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 MAGED2Q9UNF1 606 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-201ENST00000375820 DMRT2Q9Y5R5 561 aa15.18■□□□□ 0.02
COL4A1-201ENST00000375820 TRIM68Q6AZZ1 485 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 ZBED4O75132 1171 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TUBB4AP04350 444 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 YARSP54577 528 aaKnown RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 B4GALNT4Q76KP1 1039 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 DDX27Q96GQ7 796 aaKnown RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 BZW2Q9Y6E2 419 aaKnown RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TMEM87BQ96K49 555 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 CARD10Q9BWT7 1032 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 PPP1R12AO14974 1030 aaPredicted RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 RPS6KA1Q15418 735 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 KRT40Q6A162 431 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 LMNTD2Q8IXW0 634 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 GLG1Q92896 1179 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 DACT3Q96B18 629 aaPredicted RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 MMS19Q96T76 1030 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TOP2BQ02880 1626 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TRIM14Q14142 442 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 FAM98CQ17RN3 349 aaKnown RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 KAZNQ674X7 775 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TAOK1Q7L7X3 1001 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 EEF2KMTQ96G04 330 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 INTS4Q96HW7 963 aaKnown RBP15.17■□□□□ 0.02
COL4A1-201ENST00000375820 TECP42680 631 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 SLC12A2P55011 1212 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 SPATA5Q8NB90 893 aa15.17■□□□□ 0.02
COL4A1-201ENST00000375820 FLT4P35916 1363 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 PNMA6EA0A0J9YXQ4 647 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 CUTAO60888 179 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 KRT81Q14533 505 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 SESN3P58005 492 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 TFAP4Q01664 338 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 DENND2CQ68D51 928 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 RSAD2Q8WXG1 361 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 CABS1Q96KC9 395 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 GOLGA8HP0CJ92 632 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 CDAN1Q8IWY9 1227 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 ARHGAP42A6NI28 874 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 ATP1A2P50993 1020 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms